Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F08_e638_12.seq
         (1567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   203   3e-52
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             197   2e-50
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    32   0.90 

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  203 bits (495), Expect = 3e-52
 Identities = 107/178 (60%), Positives = 126/178 (70%), Gaps = 2/178 (1%)
 Frame = +1

Query: 130 CQKLFEVVDEHKLRIFYEKRMGREVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNS 309
           CQK  E+ D+ KLR FY+KR+ +EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  
Sbjct: 12  CQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPMKQGVLTPG 71

Query: 310 RVRLLMSKGHSCYR--PRRDGERKRKSVXGCIVDANLSVLALVIVRKGAQEIPGLTDGEV 483
           RVRLL+ +G  C+R   RR GER+RKSV GCIV  +LSVL LVIV+KG  ++PGLTD E 
Sbjct: 72  RVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEK 131

Query: 484 PRRLGPKRASKIRKLFNLKKRRRCAVAML*NAFYLPKRAXKMXNPDTKAPKIQRLVSP 657
           PR  GPKRASKIRKLFNLKK     V    N  Y  K   K     +KAPKIQRLV+P
Sbjct: 132 PRMRGPKRASKIRKLFNLKKED--DVRTYVNT-YRRKFTNKKGKEVSKAPKIQRLVTP 186


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  197 bits (480), Expect = 2e-50
 Identities = 104/178 (58%), Positives = 124/178 (69%), Gaps = 2/178 (1%)
 Frame = +1

Query: 130 CQKLFEVVDEHKLRIFYEKRMGREVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNS 309
           CQK  E+ D+ KLR F++KR+ +EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  
Sbjct: 12  CQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPG 71

Query: 310 RVRLLMSKGHSCYR--PRRDGERKRKSVXGCIVDANLSVLALVIVRKGAQEIPGLTDGEV 483
           RVRLL+ +G  C+R   RR GER+RKSV GCIV  +LSVL LVIV+KG  ++PGLTD E 
Sbjct: 72  RVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEK 131

Query: 484 PRRLGPKRASKIRKLFNLKKRRRCAVAML*NAFYLPKRAXKMXNPDTKAPKIQRLVSP 657
           PR  GPKRASKIRKLFNL K     V    N  Y      K     +KAPKIQRLV+P
Sbjct: 132 PRMRGPKRASKIRKLFNLGKED--DVRKYVNT-YRRTFTNKKGKKVSKAPKIQRLVTP 186


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 32.3 bits (70), Expect = 0.90
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
 Frame = +1

Query: 454 EIPGLTDGEVPRRLGPKRASKIRKLFNLKKRRRCAVAML*NAFYL-PK 594
           E+PGL D  V   L PK+ ++++KL   +++R+  V+ + +A YL PK
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL--RREKRKFKVSAVGSAIYLHPK 665


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,641,211
Number of Sequences: 28952
Number of extensions: 323108
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4212064704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)