Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F07_e630_11.seq
         (1583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)              32   1.1  
SB_16744| Best HMM Match : DUF1610 (HMM E-Value=1.6)                   29   7.8  

>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
          Length = 1069

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 211 PRPRRPERFDTAEQISNYLKELQXYYSVH 297
           P PRRP RF   E I  +L++ + Y S++
Sbjct: 117 PAPRRPRRFSGREDIRKFLRDFEIYVSLN 145


>SB_16744| Best HMM Match : DUF1610 (HMM E-Value=1.6)
          Length = 130

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 679 SKYMTIK-FKNNFIISILSNSYRLLNKISFYN 587
           +KY T + F+ NFI S+L++ YR+ N    YN
Sbjct: 76  NKYTTPRCFQLNFIYSMLTDGYRVDNSFELYN 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,081,545
Number of Sequences: 59808
Number of extensions: 488519
Number of successful extensions: 700
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5188097434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)