Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F05_e614_11.seq
         (1568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    96   1e-20
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    93   9e-20
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    66   2e-11
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    32   0.25 
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    29   1.3  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    29   2.3  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    28   4.0  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 42/77 (54%), Positives = 57/77 (74%)
 Frame = +1

Query: 22  IQSKNALESYCFNXKSTMEDEKLKDKITDSDKQIIMDKCNDTIKWLDSNQLAXKEEYEHK 201
           IQ+KN LESY ++ +++++D  LKDK+  SDK+ I     +TI+WLD N  A K+EYE K
Sbjct: 534 IQAKNHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDK 593

Query: 202 QKELEGVCNPIITKLYQ 252
           QKELEGV NPI+ K+YQ
Sbjct: 594 QKELEGVANPIMAKIYQ 610


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 93.1 bits (221), Expect = 9e-20
 Identities = 40/77 (51%), Positives = 57/77 (74%)
 Frame = +1

Query: 22  IQSKNALESYCFNXKSTMEDEKLKDKITDSDKQIIMDKCNDTIKWLDSNQLAXKEEYEHK 201
           IQ+KN LESY ++ +++++D  LKDK+  SDK+ +     +TI+WLDSN  A K+E+E K
Sbjct: 534 IQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAK 593

Query: 202 QKELEGVCNPIITKLYQ 252
           QKELE V NPI+ K+YQ
Sbjct: 594 QKELESVANPIMAKIYQ 610


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 30/81 (37%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
 Frame = +1

Query: 13  KDTIQSKNALESYCFNXKSTMED-EKLKDKITDSDKQIIMDKCNDTIKWLD-SNQLAXKE 186
           K+ I+++N LE+Y ++ K   +D E+L  K+   DKQ ++D   D  +WL+   + A KE
Sbjct: 561 KERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKE 620

Query: 187 EYEHKQKELEGVCNPIITKLY 249
           E+E ++++L+ V +PI  KLY
Sbjct: 621 EFEDQRQKLDAVVHPITQKLY 641


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
 Frame = +2

Query: 38  LSSRTASTXSPPWKMRSLRTRLLTPISKSSWTSATTPSNGSTRISWLXRKSMSTSRRNWR 217
           +SS ++ + SP     ++ +   +P S SS++S T+ S  S+  S     S STS     
Sbjct: 326 MSSSSSFSSSPTSSSSTISSSSSSP-SSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLT 384

Query: 218 VFATRSSRSCTRXXXXXXXXXXXXXXGSLAEH-PVREAXRPAEVPDPPSRRSTKHS 382
             ++ SSR  +                S +   PV  A          S  S+ HS
Sbjct: 385 SSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHS 440


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 73  MEDEKLKDKITDSD-KQIIMDKCNDTIKWLDSNQLAXKEEYEHKQK 207
           +E  + K   TD+D KQ++ D   +  KW +  ++  +E YE  +K
Sbjct: 264 LEGNRSKINATDADVKQLLSDVKKNKSKWANDQRIGQEELYEAAEK 309


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +1

Query: 16  DTIQSKNALESYCFNXKSTMED--EKLKDKITDSDKQIIMDKCNDTIKWL-DSNQLAXKE 186
           +T+  KNALE Y ++ ++ ++D      ++   S  + ++ K  D   WL +  +   K 
Sbjct: 575 ETVDRKNALEEYIYDTRAKLDDIYAPFTNEEESSKFKEMLTKAED---WLYEEGEDTTKA 631

Query: 187 EYEHKQKELEGVCNPI 234
            Y  K ++L  V  PI
Sbjct: 632 VYTAKLEDLMRVGGPI 647


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +2

Query: 11  VRTLFNRRMLSSRTASTXSPPWKMRSLRTRLLTPISKSSWTSATTPSNGST 163
           + T ++ R+ +S T S      K  S+ T  LT IS S   ++T P+NG+T
Sbjct: 172 ITTPYSNRITNSNT-SVNDITSKYLSVGTITLTTISGSDLYTSTFPANGTT 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,494
Number of Sequences: 5004
Number of extensions: 20647
Number of successful extensions: 218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 884049604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)