Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F04_e606_12.seq
         (1600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    31   0.59 
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    27   9.5  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +1

Query: 418 GGNLAHVVGFDESSVLMLGDKK--RTKESEALRATLELPSDSCIDFVQTVDGLVFSSTNY 591
           GG L  V G   S   +LGD+K  R K S A+ +   +P     +F + ++G+ +S  + 
Sbjct: 168 GGQLEQVKGITYSLDALLGDEKLARLKRSHAIPSPDHIPHIRQEEFAK-LNGIHYSLQDL 226

Query: 592 LKLDGGKRKQFLQTAA 639
           +  D G+R   ++ A+
Sbjct: 227 MGHDHGERPSHVKDAS 242


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 285 ENVFNSTGAEWKIQKRLFTQNNIGQTKFYFECIHKVDNVLFIFV-ECITSSF 133
           E +F++      I  ++F +++I    F+  C H V N LF+F    IT+SF
Sbjct: 17  EVLFSAISFGISIYIKVFGRSSI--VTFFLLCFHLVPNALFLFPWTIITTSF 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,118,008
Number of Sequences: 5004
Number of extensions: 66463
Number of successful extensions: 174
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 903871344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)