Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F04_e606_12.seq
         (1600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72512-8|CAH04717.1|  583|Caenorhabditis elegans Hypothetical pr...    31   3.0  
Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical pr...    31   3.0  
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    30   5.3  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    30   5.3  
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    29   9.2  

>Z72512-8|CAH04717.1|  583|Caenorhabditis elegans Hypothetical
           protein R07B5.8b protein.
          Length = 583

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +1

Query: 490 KESEALRATLELPSDSCIDFVQ-----TVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQ 654
           +ESEA + T       C+D+V      ++DG    S   ++ D  +RK   +T  H  M+
Sbjct: 428 RESEASKETKVQYDPECLDWVPRKMRPSMDGYHELSKEEIEQDEQRRKSIQKTPVHVSME 487

Query: 655 KMTXGTTSA 681
           K T  +T++
Sbjct: 488 KATPTSTTS 496


>Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical
           protein R07B5.8a protein.
          Length = 568

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +1

Query: 490 KESEALRATLELPSDSCIDFVQ-----TVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQ 654
           +ESEA + T       C+D+V      ++DG    S   ++ D  +RK   +T  H  M+
Sbjct: 473 RESEASKETKVQYDPECLDWVPRKMRPSMDGYHELSKEEIEQDEQRRKSIQKTPVHVSME 532

Query: 655 KMTXGTTSA 681
           K T  +T++
Sbjct: 533 KATPTSTTS 541


>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
           protein R10E11.1b protein.
          Length = 2056

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 548 KSMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 429
           KS  +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 8   KSRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
           protein R10E11.1a protein.
          Length = 2045

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 548 KSMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 429
           KS  +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 8   KSRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 579 VDELLETRRRQEKAVPADCSARYHAEDDXGNN 674
           +DE+++  R  EK +P  C+ R HA    G +
Sbjct: 673 IDEIIKNSRGYEKLIPPSCTFRAHASPWKGTS 704


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,652,766
Number of Sequences: 27780
Number of extensions: 410296
Number of successful extensions: 981
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4639367406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)