Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F04_e606_12.seq
         (1600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17220.1 68417.m02590 expressed protein                             30   3.7  
At3g18010.1 68416.m02289 homeobox-leucine zipper transcription f...    29   6.5  

>At4g17220.1 68417.m02590 expressed protein
          Length = 513

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 358 LLENLGMSMSIVTVTPELKCGGNLAHVVGFDESSVLMLGDKKRTKESEALR 510
           +LE   +S SIV +   +  GG  A+ V      +  L D+KRT E E  R
Sbjct: 199 VLEIEKLSQSIVELEEAILAGGTAANAVRDYRRQISQLNDEKRTLERELAR 249


>At3g18010.1 68416.m02289 homeobox-leucine zipper transcription
           factor family protein similar to wuschel protein
           (GI:22087128) [Arabidopsis thaliana]; similar to HB2
           homeodomain protein GB:CAA09367 from [Populus tremula x
           Populus tremuloides]
          Length = 366

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -3

Query: 611 LPPSSFK*FVDENTRPSTV*TKSMQESDGSSNVALSASDSLVLFLSPSIRTDDSSNPTTC 432
           LPPS +      + R   + + ++  +  +SN A+SAS   V      +RT +++N  TC
Sbjct: 245 LPPSFYSSSHHHHQRNLILNSPTVSSNMSNSNNAVSASKDTVTVSPVFLRTREATNTETC 304

Query: 431 AR 426
            R
Sbjct: 305 HR 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,295,609
Number of Sequences: 28952
Number of extensions: 367186
Number of successful extensions: 875
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4318089216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)