Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F03_e598_11.seq
         (1567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   298   6e-81
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    31   2.9  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  298 bits (732), Expect = 6e-81
 Identities = 136/195 (69%), Positives = 156/195 (80%)
 Frame = +3

Query: 129 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 308
           CYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E LSSEALEA
Sbjct: 8   CYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEA 67

Query: 309 GRICCNKYLVKNCGKDQFHIRMRLHPFHVXRINKMLSCAGADRLQTGMRGAFGKPQGTVA 488
            RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VA
Sbjct: 68  ARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVA 127

Query: 489 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTXYEREEFEKLRDA 668
           RV IG  + S+R  +      IEA RRAKFKFPGRQ I  S+KWGFT ++RE++E++R  
Sbjct: 128 RVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAE 187

Query: 669 GRFANDGCNVKYRPE 713
           GR  +DG  V+ + E
Sbjct: 188 GRLRSDGVGVQLQRE 202


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 472 GFPNAPRIPVWSLSAPA 422
           GFPN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,652,808
Number of Sequences: 27780
Number of extensions: 416933
Number of successful extensions: 915
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4525199528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)