Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_F03_e598_11.seq
(1567 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 290 1e-78
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 289 3e-78
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 288 6e-78
At5g23575.1 68418.m02766 transmembrane protein, putative similar... 29 6.3
At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to... 29 8.3
At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to... 29 8.3
At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to... 29 8.3
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 290 bits (712), Expect = 1e-78
Identities = 134/192 (69%), Positives = 150/192 (78%)
Frame = +3
Query: 129 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 308
CYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SSEALEA
Sbjct: 8 CYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEA 67
Query: 309 GRICCNKYLVKNCGKDQFHIRMRLHPFHVXRINKMLSCAGADRLQTGMRGAFGKPQGTVA 488
RI CNKY+VK+ GKD FH+R+R+HPFHV RINKMLSCAGADRLQTGMRGAFGK GT A
Sbjct: 68 ARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCA 127
Query: 489 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTXYEREEFEKLRDA 668
RV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFT + R E+ KLR
Sbjct: 128 RVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAM 187
Query: 669 GRFANDGCNVKY 704
R DG N K+
Sbjct: 188 KRIVPDGVNAKF 199
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 289 bits (710), Expect = 3e-78
Identities = 134/192 (69%), Positives = 150/192 (78%)
Frame = +3
Query: 129 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 308
CYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SSEALEA
Sbjct: 8 CYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEA 67
Query: 309 GRICCNKYLVKNCGKDQFHIRMRLHPFHVXRINKMLSCAGADRLQTGMRGAFGKPQGTVA 488
RI CNKY+VK+ GKD FH+R+R+HPFHV RINKMLSCAGADRLQTGMRGAFGK GT A
Sbjct: 68 ARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCA 127
Query: 489 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTXYEREEFEKLRDA 668
RV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFT + R +F KLR
Sbjct: 128 RVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQE 187
Query: 669 GRFANDGCNVKY 704
R DG N K+
Sbjct: 188 KRVVPDGVNAKF 199
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 288 bits (707), Expect = 6e-78
Identities = 133/192 (69%), Positives = 150/192 (78%)
Frame = +3
Query: 129 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 308
CYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SSEALEA
Sbjct: 8 CYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEA 67
Query: 309 GRICCNKYLVKNCGKDQFHIRMRLHPFHVXRINKMLSCAGADRLQTGMRGAFGKPQGTVA 488
RI CNKY+VK+ GKD FH+R+R+HPFHV RINKMLSCAGADRLQTGMRGAFGK GT A
Sbjct: 68 ARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCA 127
Query: 489 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTXYEREEFEKLRDA 668
RV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFT + R ++ KLR
Sbjct: 128 RVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQE 187
Query: 669 GRFANDGCNVKY 704
R DG N K+
Sbjct: 188 KRIVPDGVNAKF 199
>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
cleft lip and palate transmembrane protein 1 [Homo
sapiens] GI:4039014; contains Pfam profile PF05602:
Cleft lip and palate transmembrane protein 1 (CLPTM1)
Length = 593
Score = 29.5 bits (63), Expect = 6.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 518 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQHFI 405
++NG H + GFP T P +P++S +R H +
Sbjct: 127 QNNGSLYAHIFFARSGFPIDPTDPEYQPLNSFSRTHAV 164
>At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 8.3
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 381 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 238
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 189
Score = 29.1 bits (62), Expect = 8.3
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 381 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 238
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 51 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 102
>At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 8.3
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 381 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 238
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,734,268
Number of Sequences: 28952
Number of extensions: 395215
Number of successful extensions: 923
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4212064704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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