Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_F02_e590_12.seq
(1557 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.61
07_01_0479 + 3606663-3607448 31 1.9
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 1.9
08_02_1037 - 23851750-23852132,23852622-23852784 31 2.5
07_03_1136 + 24218601-24218734,24218769-24219906 31 2.5
02_05_0686 - 30900748-30902167,30903442-30904742 31 2.5
07_03_1739 - 29148685-29149017,29149564-29149726,29149844-291500... 31 3.3
03_02_0553 - 9420960-9421164,9421634-9421812,9421902-9421970,942... 30 4.3
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 30 5.7
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 30 5.7
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 30 5.7
09_04_0130 - 14905044-14905505,14905865-14905933,14906000-149061... 29 7.5
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 29 9.9
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 9.9
07_01_0080 + 587674-588510 29 9.9
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 33.1 bits (72), Expect = 0.61
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = -1
Query: 1524 GXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP-PPXFXGXPG 1384
G RGG P G PP PP GG P P PP G PG
Sbjct: 1168 GFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPG 1215
Score = 31.1 bits (67), Expect = 2.5
Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Frame = +2
Query: 1385 PGXPXXXGGGXXGPX----LXPPXGXXRXXGGXGGPP-PXGLXXRGTPPRXPPXXPXP 1543
P P GG P + PP R GG GGPP P G PP P P P
Sbjct: 1163 PPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPP 1220
>07_01_0479 + 3606663-3607448
Length = 261
Score = 31.5 bits (68), Expect = 1.9
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Frame = +2
Query: 1385 PGXPXXXGGGXX---GPXLX--PPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXP 1549
PG P GG GP + PP G + G G PP G+ PP P P P P
Sbjct: 191 PGVPPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRPGMPPPPP 250
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.5 bits (68), Expect = 1.9
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = +2
Query: 1388 GXPXXXGGGXXGPXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXPP 1552
G P P PP G GPPP PR P P P PP
Sbjct: 319 GAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPP 373
Score = 31.1 bits (67), Expect = 2.5
Identities = 19/54 (35%), Positives = 19/54 (35%)
Frame = -1
Query: 1548 GXGXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXPPPXFXGXP 1387
G G G P RP G GP PP P R G PPP G P
Sbjct: 344 GAGSGPPPPPPPAAPAAPRPPGPGPGPPP----PPGAAGRGGGGPPPPALPGGP 393
Score = 29.5 bits (63), Expect = 7.5
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Frame = +2
Query: 1394 PXXXGGGXXGPXLXPPXGXX--RXXG-GXGGPPPXGLXXRGTPPRXPPXXP 1537
P G G P PP R G G G PPP G RG PP P
Sbjct: 340 PSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALP 390
>08_02_1037 - 23851750-23852132,23852622-23852784
Length = 181
Score = 31.1 bits (67), Expect = 2.5
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGG-PPXPPXXRXXPXGGXRXG 1423
G G G G P P G PP P P GG G
Sbjct: 121 GSGSGSGSGSGTPPSTTPGSSGTPPATPSSPSKPTGGASAG 161
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 31.1 bits (67), Expect = 2.5
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = +2
Query: 1406 GGGXXGPXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXP 1525
GGG G L P G R GG G PP G G P R P
Sbjct: 149 GGGGGGGALARPPGGGR--GGALGRPPGGGGGGGGPGRAP 186
Score = 29.1 bits (62), Expect = 9.9
Identities = 20/48 (41%), Positives = 20/48 (41%)
Frame = -1
Query: 1527 GGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXPPPXFXGXPG 1384
GG GG PR R GGG R P GG R G PP G G
Sbjct: 137 GGGGGGAPR--RVLGGGGGGGALAR--PPGGGRGGALGRPPGGGGGGG 180
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.1 bits (67), Expect = 2.5
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -1
Query: 1512 GVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXPPP 1405
G P P G PP PP P GG + GP PPP
Sbjct: 352 GPPPPPPPKGPSPPPPP-----PPGGKKGGPPPPPP 382
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 1475 GPPPXGLXXRGTPPRXPPXXPXPXPP 1552
GPPP +G PP PP P P PP
Sbjct: 343 GPPPPP-PAKGPPPPPPPKGPSPPPP 367
>07_03_1739 - 29148685-29149017,29149564-29149726,29149844-29150028,
29150708-29150977
Length = 316
Score = 30.7 bits (66), Expect = 3.3
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 1388 GXPXXXGGGXXGPXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPR 1519
G P G G G + PP GG G P G R PR
Sbjct: 42 GLPPYGGAGGSGGLVRPPSSAAGYSGGGGSSSPPGTPPRPHSPR 85
>03_02_0553 - 9420960-9421164,9421634-9421812,9421902-9421970,
9422452-9422607,9422756-9422968
Length = 273
Score = 30.3 bits (65), Expect = 4.3
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = -1
Query: 1548 GXGXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXPP 1408
G G GG GGV GGG P R G R GP PP
Sbjct: 29 GSAAGGGGGGGGGVG-----GGGGGGVGPTRRPFKRSGNRAGPYQPP 70
>12_02_0118 - 13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 29.9 bits (64), Expect = 5.7
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = -1
Query: 1527 GGXR---GGVPRXXR--PXGGGPPXPPXXRXXPXGGXRXGPXXPPPXFXGXPG 1384
GG R GG P + P GG P P P G + P PP F G PG
Sbjct: 220 GGLRTPYGGPPAPSQQVPFGGAPQWPGTQP--PPFGAQAAPSSQPPPFMGVPG 270
Score = 29.5 bits (63), Expect = 7.5
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = -1
Query: 1527 GGXRGGVP--RXXRPXGGGPPXPPXXRXXPXGGXRXGPXXPPPXFXGXP 1387
GG G P + R GGPP P GG PP F G P
Sbjct: 121 GGPPSGAPPAQAQRTPFGGPPSAMSQGPLPFGGPPAAVASQPPPFGGPP 169
>03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 29.9 bits (64), Expect = 5.7
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Frame = -1
Query: 1506 PRXXRPXGGGPPXPPXX----RXXPXGGXRXGPXXPPPXFXGXPG 1384
P +P GG PP PP P G G PPP PG
Sbjct: 180 PAYGQPYGGYPPAPPAQGYPPAAYPPAGYPQGGAYPPPGSYPPPG 224
>01_07_0188 - 41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +2
Query: 1424 PXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXP 1549
P L PP G P P G PP PP P P P
Sbjct: 549 PQLQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHP 590
>09_04_0130 - 14905044-14905505,14905865-14905933,14906000-14906104,
14906625-14906690,14907080-14907268,14907353-14907439,
14907597-14908118
Length = 499
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = -1
Query: 1551 GGXGXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGP 1420
GG G G G P+ GGG P PP R G P
Sbjct: 218 GGGGGGTASGGGAAQPQAGA-AGGGAPAPPRQRVRARRGQATDP 260
>11_06_0300 + 22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 29.1 bits (62), Expect = 9.9
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +2
Query: 1463 GGXGGPPPXGLXXRGTPPRXPPXXPXPXP 1549
GG PPP PPR P P P
Sbjct: 50 GGAAAPPPSSSSSSAPPPRAAPGLLAPRP 78
>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.1 bits (62), Expect = 9.9
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -3
Query: 1198 PPXGAXVSQRPRPPQGGKXXXPLXPPGPGIPXXXP 1094
PP G SQ P PP P PP P P P
Sbjct: 97 PPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQP 131
>07_01_0080 + 587674-588510
Length = 278
Score = 29.1 bits (62), Expect = 9.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 1478 PPPXGLXXRGTPPRXPPXXPXPXPP 1552
PPP G+PP PP P P PP
Sbjct: 93 PPPPPPPSSGSPPPPPPPPPPPPPP 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,597,912
Number of Sequences: 37544
Number of extensions: 618193
Number of successful extensions: 2349
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2242
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5023712764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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