Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_F02_e590_12.seq
(1557 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.62
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 31 2.5
SB_46186| Best HMM Match : zf-RanBP (HMM E-Value=0.45) 31 2.5
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.3
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 31 3.3
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.3
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 30 4.4
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.4
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 30 4.4
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042) 30 4.4
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 30 5.8
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 7.6
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 29 7.6
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.6
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.6
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.6
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 33.1 bits (72), Expect = 0.62
Identities = 21/55 (38%), Positives = 21/55 (38%)
Frame = +2
Query: 1388 GXPXXXGGGXXGPXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXPP 1552
G P G GP PP G G GGPPP G G PP P PP
Sbjct: 557 GQPPPGAGQGGGP---PPPGA-----GQGGPPPPGAGQEGPPPPGAGQGGGPPPP 603
Score = 31.5 bits (68), Expect = 1.9
Identities = 22/69 (31%), Positives = 25/69 (36%)
Frame = -3
Query: 1204 GRPPXGAXVSQRPRPPQGGKXXXPLXPPGPGIPXXXPAX*XXNGXRAXXIGLXKKXX*NP 1025
G+PP GA P PP G+ P PPG G P G G + P
Sbjct: 524 GQPPPGAGQGGGPPPPGAGQGGGP-PPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPP 582
Query: 1024 FXXQXXPPP 998
Q PPP
Sbjct: 583 GAGQEGPPP 591
Score = 29.5 bits (63), Expect = 7.6
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = -1
Query: 1551 GGXGXGX---XGGXRGGVPRXXRPXGGGPPXPPXXR--XXPXGGXRXGPXXPPP 1405
GG G G G GG P GGGPP P + P G G PPP
Sbjct: 486 GGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPP 539
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 31.1 bits (67), Expect = 2.5
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +2
Query: 1436 PPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXPP 1552
PP PPP PP PP P P PP
Sbjct: 52 PPPPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPPPP 90
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 31.1 bits (67), Expect = 2.5
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = -1
Query: 1551 GGXGXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXPPPXF 1399
GG G GG GG GG P P G GP PP F
Sbjct: 78 GGGFSGGGGGSMGGGGLGGLFAGGMPKLRPAGERKAAGAGPRGPALKPPGF 128
Score = 29.9 bits (64), Expect = 5.8
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -1
Query: 1503 RXXRPXGGGPPXPPXXRXXPXGGXRXGPXXPPP 1405
R +P GG PP PP R P G P PPP
Sbjct: 363 RAPQPLGGPPPPPPGRR--PPSGKINPPPPPPP 393
>SB_46186| Best HMM Match : zf-RanBP (HMM E-Value=0.45)
Length = 339
Score = 31.1 bits (67), Expect = 2.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 1216 SXKKGRPPXGAXVSQRPRPPQGGKXXXPLXPPGPGIP 1106
S GRPP G ++ PP+ K P P P IP
Sbjct: 127 SVTSGRPPSGRVRARVSTPPKSAKQAKPASPVKPVIP 163
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 30.7 bits (66), Expect = 3.3
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +2
Query: 1409 GGXXGPXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXPP 1552
GG P PP G GG P P PP PP P P PP
Sbjct: 949 GGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPP--PPPPPP 994
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 30.7 bits (66), Expect = 3.3
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Frame = +2
Query: 1421 GPXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPP---XXPXPXPP 1552
GP PP GG PPP L PP PP P P PP
Sbjct: 659 GPPPPPPPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPPPPP 705
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 30.7 bits (66), Expect = 3.3
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = -1
Query: 1506 PRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXPPP 1405
P P GGGPP P P GG R P PPP
Sbjct: 441 PPHGMPQGGGPPQLPPNLPPPPGGMRGMP--PPP 472
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 30.3 bits (65), Expect = 4.4
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Frame = +2
Query: 1412 GXXGPXLXPPXGXXRXXGGXGGPPPXGLX-----XRGTP-PRXPPXXPXP 1543
G GP PP G + GG GP P L G P PR P P P
Sbjct: 55 GDQGPQ-GPPGGSTQTAGGIKGPDPNDLAAGIKGSNGAPGPRGSPGLPGP 103
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 30.3 bits (65), Expect = 4.4
Identities = 23/53 (43%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = +2
Query: 1406 GGGXXGPXLXPPXGX-XRXXG---GXGGPPPXGLXXRGTPPRXPPXXPXPXPP 1552
GG GP PP G R G G GGPP G PPR P P P PP
Sbjct: 68 GGYGGGPPRGPPRGHPMRGRGAPYGRGGPPSRG------PPRGP---PLPGPP 111
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 30.3 bits (65), Expect = 4.4
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 1198 PPXGAXVSQRPRPPQGGKXXXPLXPPGPG 1112
PP G P PP GG P PP PG
Sbjct: 656 PPGGGMFPPPPPPPPGGGVPGPPKPPPPG 684
>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
Length = 792
Score = 30.3 bits (65), Expect = 4.4
Identities = 19/58 (32%), Positives = 21/58 (36%)
Frame = +2
Query: 1379 TLPGXPXXXGGGXXGPXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXPP 1552
T G P GP + P G GGPP + G PR P P P PP
Sbjct: 219 TCHGHPMDRPMDPGGPRMDHPMGHGGPPMDRGGPP---MMHGGPGPRMPHSGPEPVPP 273
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 29.9 bits (64), Expect = 5.8
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -1
Query: 1503 RXXRPXGGGPPXPPXXRXXPXGGXRXGPXXPPP 1405
R +P GG PP PP R P G P PPP
Sbjct: 275 RAPQPLGGPPPPPPGRR--PPSGKINPPPPPPP 305
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.5 bits (63), Expect = 7.6
Identities = 18/56 (32%), Positives = 20/56 (35%)
Frame = +2
Query: 1385 PGXPXXXGGGXXGPXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXPP 1552
P P G P + P G G G P P G +PP PP P P P
Sbjct: 594 PAGPQGPNGQPGPPGVNGPPGEIGEIGPAGLPGPPGPASPPSPP-GPPGPPGPKGP 648
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 29.5 bits (63), Expect = 7.6
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +2
Query: 1412 GXXGPXLXPPXGXX-RXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXPP 1552
G P + PP G G GG PP G+ P PP P PP
Sbjct: 251 GMPPPGMMPPPGFPPMGMPGMGGMPPPGMPPPMPPGGMPPNMEQPPPP 298
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 29.5 bits (63), Expect = 7.6
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +2
Query: 1385 PGXPXXXGGGXXGPXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXP 1549
P P G GP PP G G PP G G PP PP P
Sbjct: 2171 PSVPPPMGAPPSGP---PPMGAPPSGPPPMGTPPSGHPPMGAPPMGPPPSGSHSP 2222
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 29.5 bits (63), Expect = 7.6
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = -2
Query: 797 IRKAQYSKNGTVLIXPXPEN*PLLMKKTPQN*LIYKKHLYVRASKMRKRHFTNNTQ 630
+ +++Y +NGT+ P N L + P+N + +K +V+ + + N+ Q
Sbjct: 1013 LNQSEYPRNGTLNQSEYPRNGTLNQSEYPRNGTLNQKESWVKQGPKKDTFYVNHCQ 1068
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 29.5 bits (63), Expect = 7.6
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 1195 PXGAXVSQRPRPPQGGKXXXPLXPPGPGIPXXXP 1094
P G R PP GG P+ PGPG+P P
Sbjct: 414 PHGPPFGPRGPPPHGGPPRGPMG-PGPGMPPMRP 446
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,750,297
Number of Sequences: 59808
Number of extensions: 597814
Number of successful extensions: 1547
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5082457441
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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