Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_F02_e590_12.seq
(1557 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 38 0.015
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 35 0.14
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 35 0.14
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 35 0.14
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 34 0.24
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 34 0.24
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 33 0.55
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 33 0.72
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.96
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.96
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.96
U64844-10|AAB18310.1| 448|Caenorhabditis elegans Hypothetical p... 32 1.3
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 32 1.3
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 31 1.7
U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical pr... 31 2.2
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 31 2.9
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 31 2.9
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 31 2.9
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 30 5.1
Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical pr... 30 5.1
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 5.1
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 5.1
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 5.1
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 5.1
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 29 6.7
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 29 6.7
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 6.7
AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical ... 29 6.7
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 29 8.9
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 29 8.9
AF125971-3|AAN73292.1| 152|Caenorhabditis elegans Hypothetical ... 29 8.9
AF125971-2|AAN73291.1| 458|Caenorhabditis elegans Hypothetical ... 29 8.9
AC025722-2|AAK68508.1| 605|Caenorhabditis elegans Hypothetical ... 29 8.9
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 38.3 bits (85), Expect = 0.015
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = -1
Query: 1518 RGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXPPPXFXGXPG 1384
+GG R P GPP PP P GG GP PP G PG
Sbjct: 249 QGGSSRPGPPGPAGPPGPPGNNGAPGGGYGVGPPGPPGP-SGRPG 292
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.1 bits (77), Expect = 0.14
Identities = 18/37 (48%), Positives = 19/37 (51%)
Frame = -1
Query: 1515 GGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXPPP 1405
GG P P GG PP PP P GG + GP PPP
Sbjct: 756 GGPPPPPPPPGGCPPPPPPP---PPGGFKGGPPPPPP 789
Score = 34.7 bits (76), Expect = 0.18
Identities = 23/59 (38%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Frame = +2
Query: 1385 PGXPXXXGGGXXGPXLXPPXGXXRXXGGXGGPPPXG---LXXRGTPPRXPPXXPXPXPP 1552
PG P GG P PP G GG PPP G G PP PP P PP
Sbjct: 717 PGLPPITGGPPPPP---PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Score = 29.1 bits (62), Expect = 8.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 1198 PPXGAXVSQRPRPPQGGKXXXPLXPPGPGI 1109
PP G P PP GG P PP PG+
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPPPPGM 792
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.1 bits (77), Expect = 0.14
Identities = 18/37 (48%), Positives = 19/37 (51%)
Frame = -1
Query: 1515 GGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXPPP 1405
GG P P GG PP PP P GG + GP PPP
Sbjct: 756 GGPPPPPPPPGGCPPPPPPP---PPGGFKGGPPPPPP 789
Score = 34.7 bits (76), Expect = 0.18
Identities = 23/59 (38%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Frame = +2
Query: 1385 PGXPXXXGGGXXGPXLXPPXGXXRXXGGXGGPPPXG---LXXRGTPPRXPPXXPXPXPP 1552
PG P GG P PP G GG PPP G G PP PP P PP
Sbjct: 717 PGLPPITGGPPPPP---PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Score = 29.1 bits (62), Expect = 8.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 1198 PPXGAXVSQRPRPPQGGKXXXPLXPPGPGI 1109
PP G P PP GG P PP PG+
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPPPPGM 792
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.1 bits (77), Expect = 0.14
Identities = 18/37 (48%), Positives = 19/37 (51%)
Frame = -1
Query: 1515 GGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXPPP 1405
GG P P GG PP PP P GG + GP PPP
Sbjct: 339 GGPPPPPPPPGGCPPPPPPP---PPGGFKGGPPPPPP 372
Score = 34.7 bits (76), Expect = 0.18
Identities = 23/59 (38%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Frame = +2
Query: 1385 PGXPXXXGGGXXGPXLXPPXGXXRXXGGXGGPPPXG---LXXRGTPPRXPPXXPXPXPP 1552
PG P GG P PP G GG PPP G G PP PP P PP
Sbjct: 300 PGLPPITGGPPPPP---PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
Score = 29.1 bits (62), Expect = 8.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 1198 PPXGAXVSQRPRPPQGGKXXXPLXPPGPGI 1109
PP G P PP GG P PP PG+
Sbjct: 346 PPPGGCPPPPPPPPPGGFKGGPPPPPPPGM 375
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical protein
ZK863.2 protein.
Length = 330
Score = 34.3 bits (75), Expect = 0.24
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = -1
Query: 1491 PXG-GGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
P G GPP PP P GG GP P PP G PG
Sbjct: 173 PAGPAGPPGPPGPDGAPGGGSGPGPAGPAGPPGPDGNPG 211
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical protein
ZK863.2 protein.
Length = 330
Score = 34.3 bits (75), Expect = 0.24
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = -1
Query: 1491 PXG-GGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
P G GPP PP P GG GP P PP G PG
Sbjct: 173 PAGPAGPPGPPGPDGAPGGGSGPGPAGPAGPPGPDGNPG 211
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 33.1 bits (72), Expect = 0.55
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -1
Query: 1491 PXGGGPPXPPXXRXXPXGGXRXGPXXPPPXFXGXPG 1384
P G G P P P G GP PP F G PG
Sbjct: 440 PGGSGAPPPGPPGAYPGNGAPGGPPGGPPQFPGHPG 475
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 32.7 bits (71), Expect = 0.72
Identities = 23/60 (38%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Frame = +2
Query: 1385 PGXPXXXG----GGXXGP-XLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXP 1549
PG P G GG P PP G GG G PPP G G PP P P P
Sbjct: 403 PGGPGGYGPPPPGGPGAPGSYGPPQGGP---GGFGPPPPGGPGAYGPPPTGFPPVGAPPP 459
Score = 30.3 bits (65), Expect = 3.9
Identities = 21/58 (36%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Frame = +2
Query: 1385 PGXPXXXG---GGXXGPXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXP 1549
PG P G GG G PP G G GPPP G G PP P P
Sbjct: 417 PGAPGSYGPPQGGPGGFGPPPPGGP-----GAYGPPPTGFPPVGAPPPGAAGAPGGNP 469
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.96
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +2
Query: 1424 PXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXPP 1552
P PP G G PPP G PPR P PP
Sbjct: 303 PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 345
Score = 31.9 bits (69), Expect = 1.3
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Frame = +2
Query: 1385 PGXPXXXGGGXXGPXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXX--PXPXPP 1552
P P G G P G G G PPP R P R PP P PP
Sbjct: 298 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPP 355
Score = 29.5 bits (63), Expect = 6.7
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Frame = -1
Query: 1491 PXGGGPPXPPXXRXXPXGGXRXGP---XXPPPXFXGXP 1387
P G PP PP R P G P PPP G P
Sbjct: 292 PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSP 329
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Frame = +2
Query: 1436 PPXGXXRXXGGXGGPPPXGLXXRGTPPR--XPPXXPXPXPP 1552
PP G G PPP PPR PP P PP
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 281
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.96
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +2
Query: 1424 PXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXPP 1552
P PP G G PPP G PPR P PP
Sbjct: 324 PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 366
Score = 31.9 bits (69), Expect = 1.3
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Frame = +2
Query: 1385 PGXPXXXGGGXXGPXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXX--PXPXPP 1552
P P G G P G G G PPP R P R PP P PP
Sbjct: 319 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPP 376
Score = 29.5 bits (63), Expect = 6.7
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Frame = -1
Query: 1491 PXGGGPPXPPXXRXXPXGGXRXGP---XXPPPXFXGXP 1387
P G PP PP R P G P PPP G P
Sbjct: 313 PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSP 350
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Frame = +2
Query: 1436 PPXGXXRXXGGXGGPPPXGLXXRGTPPR--XPPXXPXPXPP 1552
PP G G PPP PPR PP P PP
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 302
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.96
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +2
Query: 1424 PXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXPP 1552
P PP G G PPP G PPR P PP
Sbjct: 309 PRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 351
Score = 31.9 bits (69), Expect = 1.3
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Frame = +2
Query: 1385 PGXPXXXGGGXXGPXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXX--PXPXPP 1552
P P G G P G G G PPP R P R PP P PP
Sbjct: 304 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPP 361
Score = 29.5 bits (63), Expect = 6.7
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Frame = -1
Query: 1491 PXGGGPPXPPXXRXXPXGGXRXGP---XXPPPXFXGXP 1387
P G PP PP R P G P PPP G P
Sbjct: 298 PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSP 335
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Frame = +2
Query: 1436 PPXGXXRXXGGXGGPPPXGLXXRGTPPR--XPPXXPXPXPP 1552
PP G G PPP PPR PP P PP
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 287
>U64844-10|AAB18310.1| 448|Caenorhabditis elegans Hypothetical
protein T22F3.7 protein.
Length = 448
Score = 31.9 bits (69), Expect = 1.3
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 423 LFSKYFFLCKKEKMNL-FTSIKSTDYTIYEIVTDNNVYYLWPLVG*GYAFYIMFDILYV 250
L + F+C K ++ FT I T Y+IY+ + + + +W + I +++YV
Sbjct: 59 LIINFTFICMKHDLSDGFTEINGTKYSIYDYTSKDKTWIIWSVAAGTIIGTIPLNMMYV 117
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 31.9 bits (69), Expect = 1.3
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +2
Query: 1406 GGGXXGPXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXPP 1552
G P PP R G PPP R PPR PP P P
Sbjct: 116 GDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTP 164
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical protein
C56A3.1 protein.
Length = 393
Score = 31.5 bits (68), Expect = 1.7
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = -1
Query: 1551 GGXGXGXXGGXRGGVPRXXRPXGGGPPXP-PXXRXXPXGGXRXG 1423
GG G GG P GGPP P P P GG G
Sbjct: 133 GGYASGGSGGFASAPVSLPAPSYGGPPPPAPSFSHAPSGGYSSG 176
>U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical protein
F54D8.6 protein.
Length = 783
Score = 31.1 bits (67), Expect = 2.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 1201 RPPXGAXVSQRPRPPQGGKXXXPLXPPGPGIP 1106
RPP G + RPP GG+ PPG G+P
Sbjct: 583 RPPGGGGIPGVDRPPGGGRRGVD-RPPGSGMP 613
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical protein
F14F7.1 protein.
Length = 305
Score = 30.7 bits (66), Expect = 2.9
Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Frame = -1
Query: 1551 GGXGXGXXGGXRGGVPRXXRP--XGGGPPXPPXXRXXPXGGXRXGPXXPPPXFXGXPGR 1381
GG G G RG P GGG P P + P R GP P G PGR
Sbjct: 218 GGVGAPGPAGPRGAPGPAGHPGSSGGGRPGPAGPKGAPGQPGRPGPDGHP----GQPGR 272
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical protein
F12F6.6 protein.
Length = 1126
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = +2
Query: 1385 PGXPXXXGGGXXGPXLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXPP 1552
P P G P PP G G P G G P PP P P P
Sbjct: 253 PSGPADIPQGPGMPRAFPPGASAPVAPGMPGAFPPGQGGPGMPGSFPPGAPGPGGP 308
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 30.7 bits (66), Expect = 2.9
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G GG G P GGPP P P G GP P P G PG
Sbjct: 174 GAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPG 228
Score = 30.3 bits (65), Expect = 3.9
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G GG G P GGPP P P G GP P P G PG
Sbjct: 234 GAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPG 288
Score = 30.3 bits (65), Expect = 3.9
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G GG G P GGPP P P G GP P P G PG
Sbjct: 324 GAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPG 378
Score = 30.3 bits (65), Expect = 3.9
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G GG G P GGPP P P G GP P P G PG
Sbjct: 354 GAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPG 408
Score = 30.3 bits (65), Expect = 3.9
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G GG G P GGPP P P G GP P P G PG
Sbjct: 369 GAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPG 423
Score = 30.3 bits (65), Expect = 3.9
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G GG G P GGPP P P G GP P P G PG
Sbjct: 384 GAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPG 438
Score = 29.9 bits (64), Expect = 5.1
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = -1
Query: 1527 GGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
GG G P GGPP P P G GP P P G PG
Sbjct: 209 GGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPG 258
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G GG G P GGPP P P G GP P P G PG
Sbjct: 219 GAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPG 273
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G GG G P GGPP P P G GP P P G PG
Sbjct: 249 GAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPG 303
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G GG G P GGPP P P G GP P P G PG
Sbjct: 309 GAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPG 363
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G GG G P GGPP P P G GP P P G PG
Sbjct: 339 GAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPG 393
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G GG G P GGPP P P G GP P P G PG
Sbjct: 399 GAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPG 453
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G GG G P GGPP P P G GP P P G PG
Sbjct: 414 GAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPG 468
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G GG G P GGPP P P G GP P P G PG
Sbjct: 429 GAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPG 483
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G GG G P GGPP P P G GP P P G PG
Sbjct: 444 GAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPG 498
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G GG G P GGPP P P G GP P P G PG
Sbjct: 459 GAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPG 513
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical protein
C15A11.5 protein.
Length = 316
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Frame = -1
Query: 1551 GGXGXGXXGGXRG-GVPRXXRPXGG-GPPXPPXXRXXPXGGXRXGPXXPP 1408
G G G RG G+P P G GP PP P G GP PP
Sbjct: 190 GNPGSPGKSGQRGRGLPG---PSGAPGPQGPPGAPGQPGSGNAPGPAGPP 236
>Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical protein
T01C3.7 protein.
Length = 352
Score = 29.9 bits (64), Expect = 5.1
Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Frame = -1
Query: 1551 GGXGXGXXGGXRGGVPRXXRPXG--GGPPXPPXXRXXPXGG 1435
GG G GG RGG P G GG P R P GG
Sbjct: 64 GGFRGGRGGGDRGGFGGRGSPRGGFGGRGSPRGGRGSPRGG 104
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical protein
W01B6.7 protein.
Length = 301
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = -1
Query: 1515 GGVPRXXRPXGG-GPPXPPXXRXXPXGGXRXGPXXPP 1408
GG P P G GPP P P G GP PP
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPP 188
Score = 29.1 bits (62), Expect = 8.9
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 1385 PGXPXXXGG-GXXGP-XLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXP 1549
PG P G G GP P G G GGP G +G P P P P P
Sbjct: 173 PGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGP-PGP 228
Score = 29.1 bits (62), Expect = 8.9
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G G G G P P G P P G GP P PP G PG
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPG 259
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = -1
Query: 1515 GGVPRXXRPXGG-GPPXPPXXRXXPXGGXRXGPXXPP 1408
GG P P G GPP P P G GP PP
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPP 188
Score = 29.1 bits (62), Expect = 8.9
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 1385 PGXPXXXGG-GXXGP-XLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXP 1549
PG P G G GP P G G GGP G +G P P P P P
Sbjct: 173 PGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGP-PGP 228
Score = 29.1 bits (62), Expect = 8.9
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G G G G P P G P P G GP P PP G PG
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPG 259
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 2 (col-2) gene, complete cds. ).
Length = 301
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = -1
Query: 1515 GGVPRXXRPXGG-GPPXPPXXRXXPXGGXRXGPXXPP 1408
GG P P G GPP P P G GP PP
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPP 188
Score = 29.1 bits (62), Expect = 8.9
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 1385 PGXPXXXGG-GXXGP-XLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXP 1549
PG P G G GP P G G GGP G +G P P P P P
Sbjct: 173 PGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGP-PGP 228
Score = 29.1 bits (62), Expect = 8.9
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G G G G P P G P P G GP P PP G PG
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPG 259
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = -1
Query: 1515 GGVPRXXRPXGG-GPPXPPXXRXXPXGGXRXGPXXPP 1408
GG P P G GPP P P G GP PP
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPP 188
Score = 29.1 bits (62), Expect = 8.9
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 1385 PGXPXXXGG-GXXGP-XLXPPXGXXRXXGGXGGPPPXGLXXRGTPPRXPPXXPXPXP 1549
PG P G G GP P G G GGP G +G P P P P P
Sbjct: 173 PGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGP-PGP 228
Score = 29.1 bits (62), Expect = 8.9
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Frame = -1
Query: 1542 GXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G G G G P P G P P G GP P PP G PG
Sbjct: 205 GPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPG 259
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical protein
C09G5.5 protein.
Length = 317
Score = 29.5 bits (63), Expect = 6.7
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Frame = -1
Query: 1536 GXXGGXRGGVPRXXRPXGG-GPPXPPXXRXXPXGGXRXGPXXP--PPXFXGXPG 1384
G G G+P P G GP PP P G GP P PP G PG
Sbjct: 194 GQSGQRSRGLPG---PSGRPGPQGPPGAPGQPGSGSTPGPAGPPGPPGPNGQPG 244
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein 20
protein.
Length = 288
Score = 29.5 bits (63), Expect = 6.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 1491 PXGGGPPXPPXXRXXPXGGXRXGPXXPP 1408
P GPP PP P R GP PP
Sbjct: 155 PGPKGPPGPPGGHGEPGPAGRGGPRGPP 182
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein 33
protein.
Length = 304
Score = 29.5 bits (63), Expect = 6.7
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Frame = -1
Query: 1551 GGXGXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGGXRXGPXXP-PPXFXGXPG 1384
G G G GG GPP PP P R G P P G PG
Sbjct: 168 GDAGTNGAPGAPGGDAPPGEAGPKGPPGPPGSPGAPGEPGRPGDDAPSEPLIPGEPG 224
>AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical
protein F13C5.2 protein.
Length = 374
Score = 29.5 bits (63), Expect = 6.7
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 1379 TLPGXPXXXGGGXXGPXLXPPXGXXRXXGGXGGPP 1483
T+ G GGG P G GG GGPP
Sbjct: 59 TVEGGESTRGGGTGRGGRGRPRGSKNSDGGAGGPP 93
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical protein
T19A5.3a protein.
Length = 715
Score = 29.1 bits (62), Expect = 8.9
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = -1
Query: 1551 GGXGXGXXGGXRGGVPRXXRPXGGGPPXPPXXRXXPXGG 1435
GG G G GG GG P GG P PP GG
Sbjct: 490 GGGGGGFGGG--GGGFGSGSPFGGAAPSPPSGPDPDFGG 526
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 29.1 bits (62), Expect = 8.9
Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Frame = +2
Query: 1370 TVCTLPGXPXXXGGG-XXGPXLXPPXGXXRXXGGXGGP----PPXGLXXRGT-------P 1513
T+ LPG P G P + PP G P PP +G P
Sbjct: 77 TLAPLPGSPPGMAGPPLLPPAVAPPTNGQETLVGINNPVQPPPPVQYQNQGPQYIEAPPP 136
Query: 1514 PRXPPXXPXPXPP 1552
P PP P P PP
Sbjct: 137 PPSPPPPPPPPPP 149
>AF125971-3|AAN73292.1| 152|Caenorhabditis elegans Hypothetical
protein Y4C6B.4b protein.
Length = 152
Score = 29.1 bits (62), Expect = 8.9
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -1
Query: 411 YFFLCKKEKMNLFTSIKSTDYTIYEIVTDNNVYYLWPLVG*GYAFYIMFDILYV 250
+ F+C K+ ++ T + T +IY+ Y LW + +ILYV
Sbjct: 33 FTFICMKDDLSQTTEVNGTLKSIYDYTPTEKKYILWAVAFGTMVGTFPINILYV 86
>AF125971-2|AAN73291.1| 458|Caenorhabditis elegans Hypothetical
protein Y4C6B.4a protein.
Length = 458
Score = 29.1 bits (62), Expect = 8.9
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -1
Query: 411 YFFLCKKEKMNLFTSIKSTDYTIYEIVTDNNVYYLWPLVG*GYAFYIMFDILYV 250
+ F+C K+ ++ T + T +IY+ Y LW + +ILYV
Sbjct: 33 FTFICMKDDLSQTTEVNGTLKSIYDYTPTEKKYILWAVAFGTMVGTFPINILYV 86
>AC025722-2|AAK68508.1| 605|Caenorhabditis elegans Hypothetical
protein Y50D4C.3 protein.
Length = 605
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = -1
Query: 1512 GVPRXXRPXGG---GPPXPPXXRXXPXGGXRXGPXXPPP 1405
G PR + GG GPP PP + P G + PPP
Sbjct: 477 GPPRGGQFHGGSQQGPPPPPPSQHHPRGFQQQAQQNPPP 515
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,427,073
Number of Sequences: 27780
Number of extensions: 520585
Number of successful extensions: 1917
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1797
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4494062834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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