Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F01_e582_11.seq
         (1502 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   1.1  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.5  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.5  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.5  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.5  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.5  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    25   1.5  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 471 NQSFYLKNQYQMFPVYSQII*AINVIGFHHHCRELHLNYVQINPNQWTY 617
           N+    KN  +MFPV       ++    +     + L +VQI+P++W Y
Sbjct: 46  NEMIVTKNGRRMFPVVKVTAAGLDPKAMY----TVLLEFVQIDPHRWKY 90


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 504 MFPVYSQII*AINVIGFHHHCRELH 578
           MF V S ++  + V+ +HH   ++H
Sbjct: 282 MFMVASSVVLTVVVLNYHHRTADIH 306


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 504 MFPVYSQII*AINVIGFHHHCRELH 578
           MF V S ++  + V+ +HH   ++H
Sbjct: 282 MFMVASSVVLTVVVLNYHHRTADIH 306


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 504 MFPVYSQII*AINVIGFHHHCRELH 578
           MF V S ++  + V+ +HH   ++H
Sbjct: 282 MFMVASSVVLTVVVLNYHHRTADIH 306


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 504 MFPVYSQII*AINVIGFHHHCRELH 578
           MF V S ++  + V+ +HH   ++H
Sbjct: 282 MFMVASSVVLTVVVLNYHHRTADIH 306


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 504 MFPVYSQII*AINVIGFHHHCRELH 578
           MF V S ++  + V+ +HH   ++H
Sbjct: 282 MFMVASSVVLTVVVLNYHHRTADIH 306


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +2

Query: 536 DKCNRISSPLPGIASKLCPNQSQPVDISDDFIFKDKVYKGHDSDI-IYR-QLLQL 694
           D+   ++ P  GIA+    NQ +   ++++F   DK++K  D  + +Y+  +LQL
Sbjct: 81  DRVFTVAIPFVGIANSCILNQDKWRLLNNNFQQIDKIFKTRDDRVKVYQAPVLQL 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,305
Number of Sequences: 336
Number of extensions: 4978
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45067000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)