Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F01_e582_11.seq
         (1502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    29   2.2  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   2.9  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    27   5.1  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    27   6.7  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    27   8.9  
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    27   8.9  

>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 168 YYTKCPKDSFLNCTGIEKEQNLTLASRITIFL*VKFVAQKKSLTKARIGEMIMKTRCYFW 347
           YY K P+ S ++    EK +NLT      +F    F  Q KS  K  +   ++K     +
Sbjct: 168 YYLKSPQLSVISAISHEKLENLTPKQLKEVFSQFLFNNQSKSSLKINLEYKVIKHLLEHY 227

Query: 348 PV 353
           P+
Sbjct: 228 PL 229


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 27/115 (23%), Positives = 49/115 (42%)
 Frame = +2

Query: 482 LFKKPIPNVPSLFSNNLSDKCNRISSPLPGIASKLCPNQSQPVDISDDFIFKDKVYKGHD 661
           L +K   N  +L  + LS     +      +  K+    S P  +S     K K+    +
Sbjct: 130 LLEKVRSNELALDDSLLSSSEKEVDEEADKLLEKVAEESSHPESVSI-LEEKKKIPLYPN 188

Query: 662 SDIIYRQLLQLREENTKLKSENGKLLDKCVTKEEYGNN*CKRKM*KTRVNKSEID 826
               YR++L+  ++   L  ENG++L + V KE+   N  +R   + R  K  ++
Sbjct: 189 GQPKYRKILENGKKVKYLLDENGEILKRLVKKEKKLKNDNERLENEHRTEKLNVN 243


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 488 KKPIPNVPSLFSNNLSDKCN--RISSPLPGIASKLCPNQSQPVD 613
           +KP P+ PS   NN  D  N  ++++P P +   +  ++S+P +
Sbjct: 89  EKPKPDAPSFADNNSFDNVNSSKLTNPSP-VQPNIVKSESEPAN 131


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 230 VLLFFYPRAVEERIFWTFCIVSKYS 156
           V++F  P     R+FW+FCIVS ++
Sbjct: 126 VIMFLAPVG---RLFWSFCIVSSFA 147


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 215 RKRAKLDVSISDHNFPLSQIRSPKKESNQ 301
           R R +++  +SDHNF ++ +R   ++  Q
Sbjct: 527 RARLRMEELLSDHNFEIADLRDELQDKEQ 555


>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 240 ASRITIFL*VKFVAQKKSLTKARIGEMIMKTRCYFWPVRP 359
           A+ IT+ L  K+   K +  K +I    + T  YF  VRP
Sbjct: 213 ANAITLELASKYALDKDTFVKGKINSAGVATLSYFQTVRP 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,332,504
Number of Sequences: 5004
Number of extensions: 79751
Number of successful extensions: 244
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 840441776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)