Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F01_e582_11.seq
         (1502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    31   2.1  
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ...    30   3.7  
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.      30   3.7  
AL132948-23|CAC51049.1|  429|Caenorhabditis elegans Hypothetical...    29   6.5  
Z80215-7|CAB02274.1|  674|Caenorhabditis elegans Hypothetical pr...    29   8.6  

>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 29/133 (21%), Positives = 55/133 (41%)
 Frame = +2

Query: 275 RSPKKESNQGENWGDDNEDEMLLLASQACENAFNSDTSQLPNYTICMXXXXXXXXXXXXX 454
           +SP    + GE   +D+ DE  +L+      A + D  Q P  ++               
Sbjct: 531 QSPVLSVHGGEEGYEDHHDEAPVLSVHTDHKAHSEDVPQSPVQSV--------------- 575

Query: 455 XXXXXXXEFLFKKPIPNVPSLFSNNLSDKCNRISSPLPGIASKLCPNQSQPVDISDDFIF 634
                  E + + P   VPS+ S++ S+   + + P P  + +  P+   P+  S++F  
Sbjct: 576 -HSSHASEHIDEAPQSPVPSVHSSHASEHIEQEALPSPVASERDVPSAESPLVQSENFEH 634

Query: 635 KDKVYKGHDSDII 673
             +V+  H S+ I
Sbjct: 635 HAEVHSFHASEHI 647


>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
           protein.
          Length = 1173

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = +2

Query: 635 KDKVYKGHDSDIIYRQL-LQLR---EENTKLKSENGKLLDKCVTKEE 763
           KDK+  G DSD    +L ++LR   E N++++SE  K  DKC   +E
Sbjct: 494 KDKLRHGADSDAKVNELAVELRMSKEYNSEMESELSKFRDKCEQLKE 540


>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
          Length = 1173

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = +2

Query: 635 KDKVYKGHDSDIIYRQL-LQLR---EENTKLKSENGKLLDKCVTKEE 763
           KDK+  G DSD    +L ++LR   E N++++SE  K  DKC   +E
Sbjct: 494 KDKLRHGADSDAKVNELAVELRMSKEYNSEMESELSKFRDKCEQLKE 540


>AL132948-23|CAC51049.1|  429|Caenorhabditis elegans Hypothetical
           protein Y39B6A.31 protein.
          Length = 429

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 497 IPNVPSLFSNNLSDKCNRISSPLPGIASKLCPNQSQPVDISDDFIFKDKVYKGHDSD 667
           +P   S F  ++ ++C+ I   +  I      N S  +D + DF F  + Y G DSD
Sbjct: 323 LPKRYSSFYVDIGERCSWIRLWITNIEKFDSYNNSMKLDETIDFFFDQQFYVGPDSD 379


>Z80215-7|CAB02274.1|  674|Caenorhabditis elegans Hypothetical
           protein C36B1.9 protein.
          Length = 674

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = +2

Query: 125 IKC*TLIKIKRNI*ILYKMSKRFFPQLHGDRKRAKLDVSISDHNFPLSQIRSPKKESNQG 304
           + C  L+++ R+  I +  +    P+L   R+R +  V   D+N  LS IR   KE+ +G
Sbjct: 520 VDCDRLLRVLRHHSIKFAPTIVESPRLTERRRRRQRPVPADDYNAHLSVIRKRAKEALRG 579

Query: 305 ENWGDDNEDEMLLLASQACENAFNS 379
                    E   L  +   N  NS
Sbjct: 580 NRPEQPTNGEESNLTIRLIVNLANS 604


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,137,144
Number of Sequences: 27780
Number of extensions: 444522
Number of successful extensions: 1192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4329178048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)