Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F01_e582_11.seq
         (1502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47260.1 68416.m05133 Ulp1 protease family protein contains P...    33   0.37 
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    31   2.6  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    30   4.5  

>At3g47260.1 68416.m05133 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At1g32840, At4g04010,
           At2g06430, At2g15140, At2g04980, At2g14130, At3g44500,
           At2g15190, At5g34900, At3g29210, At2g02210, At3g32900
          Length = 820

 Score = 33.5 bits (73), Expect = 0.37
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 632 FKDKVYKGHDSDIIYRQLLQLREENTKLKSE--NGKLLDKCVTKEEYGNN*CKRKM 793
           FK  V   H  D+ ++Q+L+L +   +LK    N + +D CV  EE G N    K+
Sbjct: 319 FKSLVPDFHTDDVEFQQVLELVKMGYRLKKTEWNTRCVDVCVALEEVGQNKINNKI 374


>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 368 HFHRPDWPEVASRLHYHLPNSRLG*TLFLGYEFDSKE 258
           HF RP+W EV S +    PNS +G   + G +  +KE
Sbjct: 868 HFARPNWKEVFSSIARKHPNSTVG-VFYCGIQTVAKE 903


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = +2

Query: 515  LFSNNLSDKCNRISSPLPGIASKLCPNQSQPVDISDDFIFKDKVYKGHDSDIIYRQLLQL 694
            +    L  +C ++S         +  N      ++   + ++KV      D  +RQ+LQL
Sbjct: 1020 ILEEELESQCQQLSFSRDETQKLIFVNGELTTKVNQG-VNREKVLMVEIEDF-HRQVLQL 1077

Query: 695  REENTKLKSENGKLLDK 745
            R++ T L+ +N K LD+
Sbjct: 1078 RDDYTILQGDNNKTLDE 1094


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,476,240
Number of Sequences: 28952
Number of extensions: 402342
Number of successful extensions: 950
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4009654272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)