Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E12_e669_10.seq
         (1517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.42 
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    29   1.7  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   2.9  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   6.8  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    27   9.0  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 17/49 (34%), Positives = 17/49 (34%)
 Frame = -2

Query: 1468 GGXGXXXXGXAXGPXXXXXXXGGVXGXXGXXXXGXGXAGPGGXXRXGPG 1322
            GG G    G   GP       GG  G  G    G G  G G     GPG
Sbjct: 224  GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 210 SSKPEINVLNFSYGLQNNLAKIKTYVSVALYCYWLISL 97
           + +P + V NF   L + LA I    S  LYC W IS+
Sbjct: 135 TKRPVLFVNNFLISLFSGLANILQIDSDELYCVWKISI 172


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 573 LPLVYGVCCTFQENNDIKLSKHILKINKKYLPTPINSFFYHSTFSLLSHFYFIIHK 406
           +P +  V CT  ++  I L + +  I +  L   I   F  ST++L S F  ++ K
Sbjct: 178 IPTLPSVFCTIVDDEGISLKELLYIIEESLLKNAIPDPFSVSTYTLKSAFEHLVKK 233


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 431 VIFISSSINLPSKTCV*RFIINNTFSVYYILSVFCFCMIFKNNLL 297
           +I   SS++LPS      F+ +N     Y  S  C+ +IF ++LL
Sbjct: 621 LILSGSSVDLPSA----EFLSSNLTDALYSGSSICYSLIFSHSLL 661


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 555 VCCTFQENNDIKLSKHILKINKKYLP 478
           +C +F E+N I  SK++  ++K Y P
Sbjct: 88  ICQSFDESNIITPSKYLFPLSKDYSP 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,303,810
Number of Sequences: 5004
Number of extensions: 76179
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 850352646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)