Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E12_e669_10.seq
         (1517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  
SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.4  
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)                      29   9.8  

>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +3

Query: 1347 PGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXPP 1469
            P P  P P +  P  P  PP        P A P    P PP
Sbjct: 50   PPPPPPSPPAAAPAAP-PPPAAAPAAPPPPAAPPAAPPPPP 89


>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 21/78 (26%), Positives = 21/78 (26%), Gaps = 1/78 (1%)
 Frame = -2

Query: 1468 GGXGXXXXGXAXGPXXXXXXXGGVXGXXGXXXXGXGXA-GPGGXXRXGPGXXPXGXXXXA 1292
            GG      G   G        GG  G  G    G G A G GG    G G    G     
Sbjct: 244  GGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGAT 303

Query: 1291 GRAKKXWGXXXFQXXXGG 1238
            G      G        GG
Sbjct: 304  GGGGGATGVGGGATGGGG 321



 Score = 29.1 bits (62), Expect = 9.8
 Identities = 18/61 (29%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
 Frame = -2

Query: 1468 GGXGXXXXGXAXGPXXXXXXXGGVXGXXGXXXXGXGXA-GPGGXXRXGPGXXPXGXXXXA 1292
            GG      G   G        GG  G  G    G G A G GG    G G    G     
Sbjct: 272  GGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGVGGGATGGGGGATGGGVGAT 331

Query: 1291 G 1289
            G
Sbjct: 332  G 332



 Score = 29.1 bits (62), Expect = 9.8
 Identities = 16/54 (29%), Positives = 16/54 (29%)
 Frame = -2

Query: 1468 GGXGXXXXGXAXGPXXXXXXXGGVXGXXGXXXXGXGXAGPGGXXRXGPGXXPXG 1307
            GG      G   G        GG  G  G    G G A  GG    G G    G
Sbjct: 286  GGATGGGGGATGGGGGATGGGGGATGVGGGATGGGGGATGGGVGATGGGGGATG 339



 Score = 29.1 bits (62), Expect = 9.8
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = -2

Query: 1468 GGXGXXXXGXAXGPXXXXXXXGGVXGXXGXXXXGXGXAGPGGXXRXG 1328
            GG      G   G        GGV G  G    G G  G GG    G
Sbjct: 321  GGATGGGVGATGGGGGATGGGGGVTGGGGGATGGGGGPGSGGCGEDG 367


>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
          Length = 186

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 16/54 (29%), Positives = 16/54 (29%)
 Frame = -2

Query: 1468 GGXGXXXXGXAXGPXXXXXXXGGVXGXXGXXXXGXGXAGPGGXXRXGPGXXPXG 1307
            GG      G   G        GG  G  G    G G A  GG    G G    G
Sbjct: 108  GGATGGHGGATGGGVGATGGHGGATGGHGGATGGHGGATGGGGGATGGGGGATG 161



 Score = 29.1 bits (62), Expect = 9.8
 Identities = 16/54 (29%), Positives = 16/54 (29%)
 Frame = -2

Query: 1468 GGXGXXXXGXAXGPXXXXXXXGGVXGXXGXXXXGXGXAGPGGXXRXGPGXXPXG 1307
            GG      G   G        GG  G  G    G G A  GG    G G    G
Sbjct: 115  GGATGGGVGATGGHGGATGGHGGATGGHGGATGGGGGATGGGGGATGGGGGATG 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,703,388
Number of Sequences: 59808
Number of extensions: 549927
Number of successful extensions: 1042
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4929866340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)