Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_E12_e669_10.seq
(1517 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing f... 31 8.4
BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor proline... 31 8.4
BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein. 31 8.4
BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein. 31 8.4
AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor proline... 31 8.4
AJ133727-1|CAB42630.1| 889|Homo sapiens hyperpolarization-activ... 31 8.4
AJ012582-1|CAB42602.1| 889|Homo sapiens hyperpolarization-activ... 31 8.4
AF065164-1|AAC28444.2| 889|Homo sapiens hyperpolarization-activ... 31 8.4
>X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing factor
protein.
Length = 707
Score = 31.5 bits (68), Expect = 8.4
Identities = 27/85 (31%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Frame = +3
Query: 1218 KXVXAXGP-PXXFWNXXXPQXFXARPAX---FXNPXGXXPGPXLX*PPG-----PAXPXP 1370
K V A GP P P A PA P G PGP PP P P P
Sbjct: 108 KPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPP 167
Query: 1371 XSXXPXXPXTPPXXXXXXXGPXAXP 1445
P TPP P A P
Sbjct: 168 TPPSSGVPTTPPQAGGPPPPPAAVP 192
>BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 31.5 bits (68), Expect = 8.4
Identities = 27/85 (31%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Frame = +3
Query: 1218 KXVXAXGP-PXXFWNXXXPQXFXARPAX---FXNPXGXXPGPXLX*PPG-----PAXPXP 1370
K V A GP P P A PA P G PGP PP P P P
Sbjct: 108 KPVVAQGPGPAPGVGSTPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPP 167
Query: 1371 XSXXPXXPXTPPXXXXXXXGPXAXP 1445
P TPP P A P
Sbjct: 168 TPPSSGVPTTPPQAGGPPPPPAAVP 192
>BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein.
Length = 525
Score = 31.5 bits (68), Expect = 8.4
Identities = 27/85 (31%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Frame = +3
Query: 1218 KXVXAXGP-PXXFWNXXXPQXFXARPAX---FXNPXGXXPGPXLX*PPG-----PAXPXP 1370
K V A GP P P A PA P G PGP PP P P P
Sbjct: 108 KPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPP 167
Query: 1371 XSXXPXXPXTPPXXXXXXXGPXAXP 1445
P TPP P A P
Sbjct: 168 TPPSSGVPTTPPQAGGPPPPPAAVP 192
>BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein.
Length = 634
Score = 31.5 bits (68), Expect = 8.4
Identities = 27/85 (31%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Frame = +3
Query: 1218 KXVXAXGP-PXXFWNXXXPQXFXARPAX---FXNPXGXXPGPXLX*PPG-----PAXPXP 1370
K V A GP P P A PA P G PGP PP P P P
Sbjct: 35 KPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPP 94
Query: 1371 XSXXPXXPXTPPXXXXXXXGPXAXP 1445
P TPP P A P
Sbjct: 95 TPPSSGVPTTPPQAGGPPPPPAAVP 119
>AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 31.5 bits (68), Expect = 8.4
Identities = 27/85 (31%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Frame = +3
Query: 1218 KXVXAXGP-PXXFWNXXXPQXFXARPAX---FXNPXGXXPGPXLX*PPG-----PAXPXP 1370
K V A GP P P A PA P G PGP PP P P P
Sbjct: 108 KPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPP 167
Query: 1371 XSXXPXXPXTPPXXXXXXXGPXAXP 1445
P TPP P A P
Sbjct: 168 TPPSSGVPTTPPQAGGPPPPPAAVP 192
>AJ133727-1|CAB42630.1| 889|Homo sapiens hyperpolarization-activated
cyclic nucleotide-gated channel hHCN2 protein.
Length = 889
Score = 31.5 bits (68), Expect = 8.4
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +3
Query: 1344 PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXPP 1469
PPGPA P S P P +PP P P P P
Sbjct: 762 PPGPA-PAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAP 802
>AJ012582-1|CAB42602.1| 889|Homo sapiens hyperpolarization-activated
cation channel HCN2 protein.
Length = 889
Score = 31.5 bits (68), Expect = 8.4
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +3
Query: 1344 PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXPP 1469
PPGPA P S P P +PP P P P P
Sbjct: 762 PPGPA-PAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAP 802
>AF065164-1|AAC28444.2| 889|Homo sapiens hyperpolarization-activated,
cyclic nucleotide-gated channel 2 protein.
Length = 889
Score = 31.5 bits (68), Expect = 8.4
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +3
Query: 1344 PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXPP 1469
PPGPA P S P P +PP P P P P
Sbjct: 762 PPGPA-PAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAP 802
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,749,152
Number of Sequences: 237096
Number of extensions: 3083909
Number of successful extensions: 10435
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10261
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22581363208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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