Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E12_e669_10.seq
         (1517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83221-9|CAB05710.1|  400|Caenorhabditis elegans Hypothetical pr...    34   0.23 
Z82095-8|CAB05029.1|  400|Caenorhabditis elegans Hypothetical pr...    34   0.23 
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    33   0.40 
Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical pr...    31   1.6  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    31   2.1  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    31   2.1  
Z73976-1|CAA98289.1|  324|Caenorhabditis elegans Hypothetical pr...    29   8.6  
Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical pr...    29   8.6  
V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein ( Caeno...    29   8.6  
J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein ( C.ele...    29   8.6  
AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen stru...    29   8.6  

>Z83221-9|CAB05710.1|  400|Caenorhabditis elegans Hypothetical
           protein C49A1.2 protein.
          Length = 400

 Score = 34.3 bits (75), Expect = 0.23
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = -3

Query: 531 NDIKLSKHILKINKKYLPTPINSFFYHSTFSLLSHFYFIIHKLTKQNLCLKIHYK-*YLF 355
           ND ++   +L+ N  ++P P+    Y     L   FYF++   T+Q+L L  H+   Y F
Sbjct: 224 NDWQVKLTLLR-NGDFIPIPLA---YPQAVFLAVRFYFLVCLFTRQHLDLSDHHAIDYFF 279

Query: 354 RVLHTFCFLFL 322
            +L +F F+F+
Sbjct: 280 PLLTSFQFIFI 290


>Z82095-8|CAB05029.1|  400|Caenorhabditis elegans Hypothetical
           protein C49A1.2 protein.
          Length = 400

 Score = 34.3 bits (75), Expect = 0.23
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = -3

Query: 531 NDIKLSKHILKINKKYLPTPINSFFYHSTFSLLSHFYFIIHKLTKQNLCLKIHYK-*YLF 355
           ND ++   +L+ N  ++P P+    Y     L   FYF++   T+Q+L L  H+   Y F
Sbjct: 224 NDWQVKLTLLR-NGDFIPIPLA---YPQAVFLAVRFYFLVCLFTRQHLDLSDHHAIDYFF 279

Query: 354 RVLHTFCFLFL 322
            +L +F F+F+
Sbjct: 280 PLLTSFQFIFI 290


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
            protein Y63D3A.5 protein.
          Length = 486

 Score = 33.5 bits (73), Expect = 0.40
 Identities = 25/79 (31%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
 Frame = +3

Query: 1236 GPPXXFWNXXXPQXFXA-RPAXFXNPXGXXPGPXLX*PPGPAXPXPXSXXPXXPXTPPXX 1412
            GPP   +    PQ F A  P  F  P      P +   PG   P P S  P     PP  
Sbjct: 342  GPPQGSFGAPPPQQFHAPSPQSFGGPP-----PPVSSAPGNFAPPPQSGPPGAFAPPPSA 396

Query: 1413 XXXXXGPXAXPXXXXPXPP 1469
                 GP   P    P PP
Sbjct: 397  FGAPQGP-GGPGGYGPPPP 414


>Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical protein
            F02D10.1 protein.
          Length = 316

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 19/60 (31%), Positives = 20/60 (33%)
 Frame = +3

Query: 1290 PAXFXNPXGXXPGPXLX*PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXPP 1469
            P    +P G   GP    PPGPA P      P  P  P        G  A P    P  P
Sbjct: 185  PGPAGSPAGPS-GPGPAGPPGPAGPPGNDGQPGQPGGPGQDGASSAGGEAGPGPAGPPGP 243


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +3

Query: 1344 PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXPP 1469
            PP P  P P S  P  P  PP        P   P    P PP
Sbjct: 73   PPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPP 114


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +3

Query: 1344 PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXPP 1469
            PP P  P P S  P  P  PP        P   P    P PP
Sbjct: 295  PPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPP 336


>Z73976-1|CAA98289.1|  324|Caenorhabditis elegans Hypothetical
           protein T07C12.1 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 438 LLSHFYFIIHKLTKQNLCLKIHYK*YLFRVLHTFCFLFLY 319
           LLSHF +    L  +N  +  H+K Y+   +  F F F+Y
Sbjct: 106 LLSHFLY--RYLVVRNAFISAHFKLYMLGTVMMFIFFFVY 143


>Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical protein
            W01B6.7 protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 17/55 (30%), Positives = 18/55 (32%)
 Frame = +3

Query: 1305 NPXGXXPGPXLX*PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXPP 1469
            +P G   GP    PPGPA P      P  P  P        G    P    P  P
Sbjct: 175  SPAGPS-GPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGP 228


>V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein (
            Caenorhabditis elegansgene Col-2 coding for a collagen.
            ).
          Length = 301

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 17/55 (30%), Positives = 18/55 (32%)
 Frame = +3

Query: 1305 NPXGXXPGPXLX*PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXPP 1469
            +P G   GP    PPGPA P      P  P  P        G    P    P  P
Sbjct: 175  SPAGPS-GPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGP 228


>J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein ( C.elegans
            (nematode)collagen 2 (col-2) gene, complete cds. ).
          Length = 301

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 17/55 (30%), Positives = 18/55 (32%)
 Frame = +3

Query: 1305 NPXGXXPGPXLX*PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXPP 1469
            +P G   GP    PPGPA P      P  P  P        G    P    P  P
Sbjct: 175  SPAGPS-GPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGP 228


>AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen
            structural gene, probabledorsal and ventral cuticle
            component, from embryo to adult,but maximal in dauer
            (28.0 kD) (col-2) protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 17/55 (30%), Positives = 18/55 (32%)
 Frame = +3

Query: 1305 NPXGXXPGPXLX*PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXPP 1469
            +P G   GP    PPGPA P      P  P  P        G    P    P  P
Sbjct: 175  SPAGPS-GPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGP 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,273,413
Number of Sequences: 27780
Number of extensions: 474516
Number of successful extensions: 1092
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4359137160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)