Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_E12_e669_10.seq
(1517 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07540.1 68418.m00863 glycine-rich protein (GRP16) oleosin; g... 36 0.093
At5g43770.1 68418.m05353 proline-rich family protein contains pr... 35 0.12
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 32 1.1
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 32 1.1
At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to uclacy... 31 2.6
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 30 3.5
At4g01985.1 68417.m00265 expressed protein 30 3.5
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 30 4.6
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 30 4.6
At5g38560.1 68418.m04662 protein kinase family protein contains ... 29 6.1
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro... 29 6.1
>At5g07540.1 68418.m00863 glycine-rich protein (GRP16) oleosin;
glycine-rich protein 16 (GRP16) PMID:11431566
Length = 244
Score = 35.5 bits (78), Expect = 0.093
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = -2
Query: 1468 GGXGXXXXGXAXGPXXXXXXXGGVXGXXGXXXXGXGXAGPGGXXRXGPGXXPXG 1307
GG G A G GG G G G GPGG G P G
Sbjct: 157 GGASGGASGGASGGASGGASGGGPGGASGGGPGGASGGGPGGASGGASGDKPEG 210
Score = 34.7 bits (76), Expect = 0.16
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = -2
Query: 1468 GGXGXXXXGXAXGPXXXXXXXGGVXGXXGXXXXGXGXAGPGGXXRXGPGXXPXG 1307
GG G A G G G G G GPGG GPG G
Sbjct: 149 GGGPGGASGGASGGASGGASGGASGGASGGGPGGASGGGPGGASGGGPGGASGG 202
>At5g43770.1 68418.m05353 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 187
Score = 35.1 bits (77), Expect = 0.12
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +3
Query: 1323 PGPXLX*PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXPP 1469
PGP PP P+ P P + P P TPP P P P P
Sbjct: 124 PGPEFPVPPSPSPPMPDTPNPPTPKTPPDVVPPIWEPPRPPDIFPPESP 172
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical to
gi|10880495|gb|AAG24277
Length = 176
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/61 (29%), Positives = 20/61 (32%)
Frame = +3
Query: 1284 ARPAXFXNPXGXXPGPXLX*PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPX 1463
A P P P P + PP PA P P + P P P P P P
Sbjct: 80 ASPPPATPPPVASPPPPVASPP-PATPPPVATPPPAPLASPPAQVPAPAPTTKPDSPSPS 138
Query: 1464 P 1466
P
Sbjct: 139 P 139
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical to
gi|10880495|gb|AAG24277
Length = 191
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/61 (29%), Positives = 20/61 (32%)
Frame = +3
Query: 1284 ARPAXFXNPXGXXPGPXLX*PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPX 1463
A P P P P + PP PA P P + P P P P P P
Sbjct: 80 ASPPPATPPPVASPPPPVASPP-PATPPPVATPPPAPLASPPAQVPAPAPTTKPDSPSPS 138
Query: 1464 P 1466
P
Sbjct: 139 P 139
>At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to uclacyanin
3 GI:3395770 from [Arabidopsis thaliana]; contains Pfam
profile PF02298: Plastocyanin-like domain; identical to
cDNA uclacyanin 3 (UCC3)GI:3395769
Length = 222
Score = 30.7 bits (66), Expect = 2.6
Identities = 13/47 (27%), Positives = 16/47 (34%)
Frame = +3
Query: 1329 PXLX*PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXPP 1469
P L P P+ P P P +PP P + P P P
Sbjct: 117 PVLAAAPSPSTPSSPPSTPSTPSSPPSTPSTPSSPPSPPSPPSPSLP 163
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 30.3 bits (65), Expect = 3.5
Identities = 20/76 (26%), Positives = 24/76 (31%)
Frame = +3
Query: 1239 PPXXFWNXXXPQXFXARPAXFXNPXGXXPGPXLX*PPGPAXPXPXSXXPXXPXTPPXXXX 1418
PP + P + P +P P P + PP P P P P P PP
Sbjct: 403 PPPSLPSPPPPAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPP 462
Query: 1419 XXXGPXAXPXXXXPXP 1466
P P P P
Sbjct: 463 VYSPPPPPPPPPPPPP 478
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 30.3 bits (65), Expect = 3.5
Identities = 22/92 (23%), Positives = 24/92 (26%)
Frame = -1
Query: 1505 GXXXXGXXXXXGXXGGXXGXXXGXXXGXGXXXXGGXXXXXGGXRXGPWXXGXRXLXKXGA 1326
G G G GG G G G GG GG G G + + G
Sbjct: 54 GGGASGGIGVGGGGGGGGGIGGSGGVGAGGGVGGGAGGAIGGGASGGAGGGGKGRGRKGG 113
Query: 1325 XPXSXRVXKXXRAGXKXLGXXAIPKXXGGAXG 1230
V AG G GG G
Sbjct: 114 GGAGGGVGGGVGAGGGAGGSVGAGGGIGGGAG 145
Score = 29.9 bits (64), Expect = 4.6
Identities = 19/62 (30%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Frame = -2
Query: 1468 GGXGXXXXGXA-XGPXXXXXXXGGVXGXXGXXXXGXGXAGPGGXXRXGPGXXPXGXXXXA 1292
GG G G G GG+ G G G G GG R G G A
Sbjct: 468 GGAGGGTGGSVGAGGGVGVGGGGGIGGGAGGGVGGGVGGGVGGGVRGAVGGAVGGGVGGA 527
Query: 1291 GR 1286
GR
Sbjct: 528 GR 529
>At3g19430.1 68416.m02464 late embryogenesis abundant protein-related
/ LEA protein-related similar to late embryogenesis
abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +3
Query: 1308 PXGXXPGPXLX*PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXP 1466
P P P P P P P P P +PP P P P P
Sbjct: 86 PTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPP 138
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +3
Query: 1308 PXGXXPGPXLX*PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXP 1466
P P P P P P P P P +PP P P P P
Sbjct: 104 PTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPP 156
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 29.9 bits (64), Expect = 4.6
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = -2
Query: 1465 GXGXXXXGXAXGPXXXXXXXGGVXGXXGXXXXGXGXAGPGGXXRXGPGXXPXG 1307
G G G GP GG G G G G GG GPG P G
Sbjct: 16 GFGGRGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGFGGRGPRGPGFGPRG 68
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 29.5 bits (63), Expect = 6.1
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +3
Query: 1308 PXGXXPGPXLX*PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXPP 1469
P P P PP P P S P +PP P + P P PP
Sbjct: 59 PVVSSPPPSSSPPPSP--PVITSPPPTVASSPPPPVVIASPPPSTPATTPPAPP 110
>At3g25500.1 68416.m03171 formin homology 2 domain-containing protein
/ FH2 domain-containing protein contains formin homology
2 domain, Pfam:PF02181
Length = 1051
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 1344 PPGPAXPXPXSXXPXXPXTPPXXXXXXXGPXAXPXXXXPXPP 1469
PP P P P P TPP P P PP
Sbjct: 37 PPSPPSPPPLPKLPFSSTTPPSSSDPNASPFFPLYPSSPPPP 78
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,474,106
Number of Sequences: 28952
Number of extensions: 406628
Number of successful extensions: 1206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4057847232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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