Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E11_e661_09.seq
         (1574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    42   2e-04
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    27   5.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.4  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    27   7.1  

>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +2

Query: 464 KPRSGTTGGKVTLEDLXGLGSINGVPXLEFNIDTIEDKPWNKPGADIS 607
           +P+  +T       D+  + +I+G    E ++++ +DKPW KPGADIS
Sbjct: 92  EPQDLSTAETAPKVDIDAVPTIDGKNIFEIDLESFDDKPWRKPGADIS 139


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 458 LQLPLIPHLFLYLNLYIVVPI 396
           L + +I HLFL LN++I +PI
Sbjct: 54  LLITIICHLFLLLNIFISIPI 74


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 25/118 (21%), Positives = 32/118 (27%), Gaps = 6/118 (5%)
 Frame = +1

Query: 1051 VXLPCXXXAXXGLXXXXPPSXXXFXXPPXXHXMXGLPXXPTXL--PTQFLXWXPXPXXXP 1224
            V LP        +    PP       PP      G P  P  +  P+  +   P P   P
Sbjct: 1024 VPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP 1083

Query: 1225 SXP----LXPLPXXXXXXXXXXXXXXVXXXXPRXIXXPPAPXAXXTXLPXAXFAPAPP 1386
              P    + P+P                   P     PP P       P    + APP
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 495 TFPPVVPERGLSPPVATNP 439
           ++PPVVP   L+ P+AT P
Sbjct: 514 SYPPVVPSPSLTIPMATEP 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,192,417
Number of Sequences: 5004
Number of extensions: 76510
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 888013952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)