Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E11_e661_09.seq
         (1574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1172 - 28147957-28148274,28149362-28149877                       32   1.4  
09_02_0543 + 10427321-10428315,10428440-10429154                       31   2.5  
06_01_0178 + 1386981-1387505                                           31   3.3  
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685...    31   3.3  
03_02_0775 - 11096620-11097240                                         31   3.3  
03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308...    30   5.8  
02_01_0213 + 1416721-1417440                                           30   5.8  

>06_03_1172 - 28147957-28148274,28149362-28149877
          Length = 277

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 1324 PPAPXAXXTXLPXAXFAPAPPXFXSXXLXXPXHXXLTPPLS-XXXXNFW 1467
            PP+P +    LP A F P PP   +     P    ++PP S     ++W
Sbjct: 15   PPSPPSVYPFLPPATFIPPPPPAATAEPYAPPSLIISPPPSPSSVLHYW 63


>09_02_0543 + 10427321-10428315,10428440-10429154
          Length = 569

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 522 PKPXKSSRVTFPPVVPERGLSPPVATNPTP 433
           P+P  + + T PP +PE G  PP A +  P
Sbjct: 16  PRPTPAPQATPPPAIPESGPPPPPAPDMPP 45


>06_01_0178 + 1386981-1387505
          Length = 174

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
 Frame = -1

Query: 1385 GGAGAKXAXGRXVXXAXGAGGXXXXRGXXXXTRXRGEXAXRW--GXXXGRGXRGXEGXXX 1212
            GGAG     G       GAGG     G       +G    R   G   G G RG +G   
Sbjct: 67   GGAGGGGGGGGGKGRKGGAGGHGGAGGGGGGGGGKGRKGGRGGDGGSGGAGGRGGDGGSG 126

Query: 1211 GXG 1203
            G G
Sbjct: 127  GQG 129


>03_05_0967 +
           29265465-29266214,29267718-29267944,29268428-29268557,
           29268651-29268719,29268803-29268946,29269775-29270011,
           29270897-29270998,29271131-29271396,29271766-29273410,
           29274449-29275018
          Length = 1379

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 3/22 (13%)
 Frame = +2

Query: 551 FNID---TIEDKPWNKPGADIS 607
           F+ID   T E+KPW  PGADIS
Sbjct: 329 FDIDVDTTFEEKPWKYPGADIS 350


>03_02_0775 - 11096620-11097240
          Length = 206

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 18/54 (33%), Positives = 18/54 (33%)
 Frame = -1

Query: 1358 GRXVXXAXGAGGXXXXRGXXXXTRXRGEXAXRWGXXXGRGXRGXEGXXXGXGHH 1197
            G     A G GG    RG        GE    W    GRG  G  G     GHH
Sbjct: 37   GVQATAAGGRGGDTRRRGTGLAAAGGGED---WWQGVGRGGEGGGGGVCDLGHH 87


>03_02_0924 +
           12429764-12430120,12430562-12430637,12430803-12430849,
           12431850-12431962,12432056-12432129,12432258-12432353,
           12432440-12432559,12432660-12432893,12433486-12433634,
           12434145-12434301,12434387-12434542,12435359-12435735,
           12435871-12436020,12437071-12437253,12437440-12437643,
           12437869-12437975,12438253-12438406,12438796-12438917,
           12439541-12439787
          Length = 1040

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 80  ESAPGDENDDNWLYGDSTGEHTEEKSQESREKE 178
           E   GDE+DD+  Y D  GE  E+   E  E++
Sbjct: 68  EEEDGDEDDDDEEYSDEEGEDDEDDEGEEDEED 100


>02_01_0213 + 1416721-1417440
          Length = 239

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 23/85 (27%), Positives = 24/85 (28%), Gaps = 1/85 (1%)
 Frame = -1

Query: 1382 GAGAKXAXGRXVXXAXGAGGXXXXRGXXXXTRXRGEXAXRW-GXXXGRGXRGXEGXXXGX 1206
            GAGAK A G       GAG               G  A    G   G G +   G   G 
Sbjct: 82   GAGAKAAIGVGAGAGAGAGAGVGAGAKAAIGAGTGAGAGAGAGAGVGAGAKAAIGAGAGV 141

Query: 1205 GHHXRN*VGRXVGXXGXPXIXCXXG 1131
            G       G  VG      I    G
Sbjct: 142  GAGAGAGAGAAVGAGAKAAIGAGAG 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,645,589
Number of Sequences: 37544
Number of extensions: 575488
Number of successful extensions: 1907
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1813
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5093325412
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)