Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E11_e661_09.seq
         (1574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical ...    39   0.011
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    32   0.97 
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    32   0.97 
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        32   0.97 
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    29   9.0  

>AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical
           protein F32D1.9 protein.
          Length = 513

 Score = 38.7 bits (86), Expect = 0.011
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 506 DLXGLGSINGVPXLEFNIDTIEDKPWNKPGADIS 607
           DL    +IN  P  + ++  +ED+PW KPGADI+
Sbjct: 120 DLDTTATINDKPIYDLDLAQMEDRPWRKPGADIT 153


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 32.3 bits (70), Expect = 0.97
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
 Frame = -1

Query: 389  LQWSLSHHHCRQNLNPHFPDCPXHR-FGPVHHAQRPRNAHH*IENHRYFLRHPXGPYPQH 213
            LQ  + +    Q + P +P    H   GPV H        H ++ H +   H   P P H
Sbjct: 1484 LQHQIPNMSMHQQMGPQYPGAVFHHPSGPVGHVPMQYGMGHHMQQHPHLPHHQQMPAPMH 1543


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 32.3 bits (70), Expect = 0.97
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
 Frame = -1

Query: 389  LQWSLSHHHCRQNLNPHFPDCPXHR-FGPVHHAQRPRNAHH*IENHRYFLRHPXGPYPQH 213
            LQ  + +    Q + P +P    H   GPV H        H ++ H +   H   P P H
Sbjct: 1482 LQHQIPNMSMHQQMGPQYPGAVFHHPSGPVGHVPMQYGMGHHMQQHPHLPHHQQMPAPMH 1541


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 32.3 bits (70), Expect = 0.97
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
 Frame = -1

Query: 389  LQWSLSHHHCRQNLNPHFPDCPXHR-FGPVHHAQRPRNAHH*IENHRYFLRHPXGPYPQH 213
            LQ  + +    Q + P +P    H   GPV H        H ++ H +   H   P P H
Sbjct: 1482 LQHQIPNMSMHQQMGPQYPGAVFHHPSGPVGHVPMQYGMGHHMQQHPHLPHHQQMPAPMH 1541


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = -3

Query: 516 PXKSSRVTFP--PVVPERGLSPPVATNPTP 433
           P    R T P  P+VP RG  P  AT P P
Sbjct: 384 PVNPGRPTHPAYPIVPTRGYPPATATPPNP 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,841,438
Number of Sequences: 27780
Number of extensions: 462012
Number of successful extensions: 1502
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4556336222
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)