Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E11_e661_09.seq
         (1574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01985.1 68417.m00265 expressed protein                             37   0.042
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    30   3.6  
At3g66652.1 68416.m00776 fip1 motif-containing protein contains ...    30   3.6  
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa...    30   4.8  
At1g54970.1 68414.m06278 proline-rich family protein similar to ...    30   4.8  
At5g11420.1 68418.m01333 expressed protein contains Pfam profile...    29   8.4  
At4g34440.1 68417.m04894 protein kinase family protein contains ...    29   8.4  

>At4g01985.1 68417.m00265 expressed protein
          Length = 579

 Score = 36.7 bits (81), Expect = 0.042
 Identities = 32/114 (28%), Positives = 32/114 (28%)
 Frame = -1

Query: 1442 SGGVXXXCXGXXRXXXXKXGGAGAKXAXGRXVXXAXGAGGXXXXRGXXXXTRXRGEXAXR 1263
            SGG      G         GGAG     G  V    G GG     G        G     
Sbjct: 397  SGGASGGASGGASGGVGGAGGAGGSVGAGGGVGGGVG-GGVGGGVGGAVGGAVGGAVGGG 455

Query: 1262 WGXXXGRGXRGXEGXXXGXGHHXRN*VGRXVGXXGXPXIXCXXGGXXXXXXXGG 1101
             G   G G RG  G   G G       G  VG  G   I    GG       GG
Sbjct: 456  GGGSVGGGGRGSGGAGGGTGGSVG--AGGGVGVGGGGGIGGGAGGGVGGGVGGG 507



 Score = 35.1 bits (77), Expect = 0.13
 Identities = 28/95 (29%), Positives = 28/95 (29%)
 Frame = -1

Query: 1385 GGAGAKXAXGRXVXXAXGAGGXXXXRGXXXXTRXRGEXAXRWGXXXGRGXRGXEGXXXGX 1206
            GG G   A GR    A G GG     G       RG      G   G G  G  G   G 
Sbjct: 198  GGGGTVGAGGRGSGGASGGGGTVGAGG-------RGSGGASGGVGVGGGAGGSGGGSVGG 250

Query: 1205 GHHXRN*VGRXVGXXGXPXIXCXXGGXXXXXXXGG 1101
            G      VG   G  G        GG       GG
Sbjct: 251  GGRGSGGVGASGGAGGNVGAGGGLGGGVGGGVGGG 285



 Score = 32.3 bits (70), Expect = 0.90
 Identities = 28/114 (24%), Positives = 31/114 (27%)
 Frame = -1

Query: 1442 SGGVXXXCXGXXRXXXXKXGGAGAKXAXGRXVXXAXGAGGXXXXRGXXXXTRXRGEXAXR 1263
            SGG+     G         GG GA    G     A G G      G       +G     
Sbjct: 58   SGGIGVGGGGGGGGGIGGSGGVGAGGGVGGGAGGAIGGGASGGAGGGGKGRGRKGGGGAG 117

Query: 1262 WGXXXGRGXRGXEGXXXGXGHHXRN*VGRXVGXXGXPXIXCXXGGXXXXXXXGG 1101
             G   G G  G  G   G G       G  +G  G        GG       GG
Sbjct: 118  GGVGGGVGAGGGAGGSVGAGGGIGGGAGGAIG--GGASGGVGGGGKGRGGKSGG 169



 Score = 30.7 bits (66), Expect = 2.8
 Identities = 32/117 (27%), Positives = 35/117 (29%), Gaps = 3/117 (2%)
 Frame = -1

Query: 1442 SGGVXXXCXGXX-RXXXXKXGGAGAKXAXGRXVXXAXGAGGXXXXRGXXXX-TRXRGEX- 1272
            SGGV     G   +      GG G     G     + GAGG     G        RG   
Sbjct: 153  SGGVGGGGKGRGGKSGGGAGGGVGGGVGAGGGAGGSVGAGGGIGSGGGGTVGAGGRGSGG 212

Query: 1271 AXRWGXXXGRGXRGXEGXXXGXGHHXRN*VGRXVGXXGXPXIXCXXGGXXXXXXXGG 1101
            A   G   G G RG  G   G G      VG   G  G   +     G       GG
Sbjct: 213  ASGGGGTVGAGGRGSGGASGGVG------VGGGAGGSGGGSVGGGGRGSGGVGASGG 263


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
 Frame = +2

Query: 1223 PXXPXXPYXXXSPT--XPXPXLXXWXXPXCPAXSXPXXPPXLXXPXSXXPFSRLXPPXSX 1396
            P  P  P    SPT   P P       P  P       PP +  P    PF+   PP S 
Sbjct: 540  PTSPGSPPSPSSPTPSSPIPSPPTPSTPPTPISPGQNSPPIIPSP----PFTGPSPPSSP 595

Query: 1397 LPXXP 1411
             P  P
Sbjct: 596  SPPLP 600



 Score = 29.1 bits (62), Expect = 8.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 534 PFILPKPXKSSRVTFPPVVPERGLSPPVATNPTP 433
           PF  P P  S     PPV+P   +  P  ++P P
Sbjct: 585 PFTGPSPPSSPSPPLPPVIPSPPIVGPTPSSPPP 618


>At3g66652.1 68416.m00776 fip1 motif-containing protein contains
           Pfam profile PF05182: Fip1 motif
          Length = 980

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 548 EFNIDTIEDKPWNKPGADIS 607
           + N+D +E KPW  PG D S
Sbjct: 159 DVNLDVLEKKPWRDPGTDTS 178


>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 983

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 38  LVDPPGCRXFGTRIESAPGDENDDNWLYGDSTGEHT---EEKSQESREKE-PEKNTAVDT 205
           L DPP  +   T+ +SA  + NDDN    D   E +   EE S  S ++E P+ +T  +T
Sbjct: 590 LEDPPDNKKDPTKSKSADAEGNDDNSHKDDQPEEKSKKAEEVSLNSDDREMPDTDTGKET 649


>At1g54970.1 68414.m06278 proline-rich family protein similar to
           proline-rich protein GI:170048 from [Glycine max]
          Length = 335

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 537 TPFILPKPXKSSRVTFPPVVPERGLSPPVATNPTPL-FIFKLVYCGPDLISPMVTFT 370
           TP +  KP   + V  PPV     LSPPV T PT L  +FK     P    P ++ T
Sbjct: 86  TPPVYNKPTLPAPVYTPPVYKPT-LSPPVYTKPTLLPPVFKPTLSPPVYTKPTLSPT 141


>At5g11420.1 68418.m01333 expressed protein contains Pfam profile
           PF04862: Protein of unknown function, DUF642
          Length = 366

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -3

Query: 207 AVST---AVFFSGSFSLDSWDFSSVCSPVESPYNQLSS 103
           AVST    +F+S  +S+ S DFSS+C PV      LS+
Sbjct: 326 AVSTRTRVMFYSTFYSMRSDDFSSLCGPVIDDVKLLSA 363


>At4g34440.1 68417.m04894 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 670

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 522 PKPXKSSRVTFPPVVPERGLSPPVATNPTP 433
           P P   ++ T PP  P    SPPV  NP+P
Sbjct: 57  PPPAPPTQETSPPTSPSS--SPPVVANPSP 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,631,363
Number of Sequences: 28952
Number of extensions: 443464
Number of successful extensions: 1679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1611
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4240980480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)