Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_E10_e653_10.seq
(1582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|... 100 6e-22
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.015
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.14
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 4.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 5.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.4
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 27 7.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 7.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 9.4
>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
Med31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 100 bits (239), Expect = 6e-22
Identities = 40/92 (43%), Positives = 63/92 (68%)
Frame = +2
Query: 347 MAAKVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREP 526
M K + ++ RF++ELEFVQ L+NP Y++FLAQ Y +++ F+ YL+Y++YWREP
Sbjct: 1 METKWLLSKVPDDKSRFEIELEFVQMLSNPWYLNFLAQHKYFEDEAFLQYLEYMEYWREP 60
Query: 527 EYARYLKYPMCLHFLELMQHEAFRRECXSAQV 622
EY +++ YP CLH L L+++ FR + A +
Sbjct: 61 EYVKFIIYPTCLHMLTLLKNPQFRNDISRADL 92
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.9 bits (79), Expect = 0.015
Identities = 29/124 (23%), Positives = 34/124 (27%), Gaps = 6/124 (4%)
Frame = +3
Query: 1215 PPQGXTXXXGPXXRPXFXPGPXPSPPGXPXXXDPPPXXHNAPRRXXPF----SPXXXXXG 1382
PP P +P P P+P G P P P P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 1383 LGAPXSXXAXXXXGVXCPXLXPPXXXXXSAXHXTGXRXLXXPXAPPPPXPXPXPPXP--S 1556
+ P V P + PP G + P A PP P P P S
Sbjct: 1191 VPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVS 1250
Query: 1557 TPLS 1568
TP S
Sbjct: 1251 TPRS 1254
Score = 29.9 bits (64), Expect = 1.0
Identities = 29/116 (25%), Positives = 33/116 (28%), Gaps = 3/116 (2%)
Frame = +3
Query: 1215 PPQGXTXXXGPXXRPXFXPGPXPSPPGXPXXXDPPPXXHNAPRRXXPFSPXXXXXG-LGA 1391
PP P P P S G P P P AP P P + A
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP----APSSEIPSIPAPSGAPPVPA 1087
Query: 1392 PXSXXAXXXXGVXCPXLXPPXXXXXSAXHXTGXRXLXXPX--APPPPXPXPXPPXP 1553
P V P + P +G + P APP P P PP P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143
Score = 28.3 bits (60), Expect = 3.1
Identities = 32/121 (26%), Positives = 36/121 (29%), Gaps = 8/121 (6%)
Frame = +3
Query: 1215 PPQGXTXXXGPXXRPXFXPGPXPSPPGXPXXXDP----PPXXHNAPRRXXPF-SPXXXXX 1379
PP P +P P P P G P P PP AP P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPV--PAPSGAPPVPKPSVAAP 1169
Query: 1380 GLGAPXSXX-AXXXXGVXCPXLXPPXXXXXSAXHXTGXRXLXXP-XAPPPPXPXP-XPPX 1550
+ AP S P + PP G + P APP P P PP
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPV 1229
Query: 1551 P 1553
P
Sbjct: 1230 P 1230
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.7 bits (71), Expect = 0.14
Identities = 31/136 (22%), Positives = 37/136 (27%), Gaps = 7/136 (5%)
Frame = +3
Query: 1170 PXGXGXXXXXXLXXGPPQGXTXXXGPXXRPXFXPGPXPSPP-GXPXXXDPPPXXHNAPRR 1346
P G G PP P P P PP P PP ++
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAV 385
Query: 1347 XXPFSPXXXXXGLGAPX-----SXXAXXXXGVXCPXLXPPXXXXXSAXHXTGXRXLXXPX 1511
P +P G AP + V P PP + P
Sbjct: 386 SNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPA 445
Query: 1512 APP-PPXPXPXPPXPS 1556
APP PP PP P+
Sbjct: 446 APPLPPSAPIAPPLPA 461
Score = 28.7 bits (61), Expect = 2.3
Identities = 26/98 (26%), Positives = 29/98 (29%)
Frame = +3
Query: 1269 PGPXPSPPGXPXXXDPPPXXHNAPRRXXPFSPXXXXXGLGAPXSXXAXXXXGVXCPXLXP 1448
P P P+ PG PP NA R P P AP S + P P
Sbjct: 389 PAPPPAIPGRSAPALPP--LGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSL--PMGAP 444
Query: 1449 PXXXXXSAXHXTGXRXLXXPXAPPPPXPXPXPPXPSTP 1562
+ P APP P P PP P
Sbjct: 445 AAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = +1
Query: 1480 PLAXG-PSXPRXPPXPPXPXPXPXXRP 1557
PL G P+ P PP P P P P P
Sbjct: 458 PLPAGMPAAPPLPPAAPAPPPAPAPAP 484
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -1
Query: 1339 GALXXFGGG-SXXXGXPGGXGLGPGXKXGRXXGPXXXVXPWGG 1214
G FGGG G PGG G GPG G G +GG
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = -1
Query: 1339 GALXXFGGG-SXXXGXPGGXGLGPGXKXG 1256
G FGGG G PGG G GPG G
Sbjct: 242 GGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 5.4
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Frame = +1
Query: 1378 GGWAPLXLXARPXXXXXXAXXSPPXXXXXXQPXTPLAXGP--SXPRXPPXPPXPXPXP 1545
GG AP + P A +PP P P++ P S P P PP P P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSA--APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 1515 PPPPXPXPXPPXPSTPL 1565
PPPP P P P+ PL
Sbjct: 7 PPPPAPAPAAAAPAPPL 23
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 552 QCVCIFWNLCNMKHSEESV 608
+CV FWN +HS+ SV
Sbjct: 616 KCVAFFWNAAKKQHSKSSV 634
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 1257 PXFXPGPXPSPPGXPXXXDPPP 1322
P P P P PP P PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPP 763
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = +1
Query: 1405 ARPXXXXXXAXXSPPXXXXXXQPXTPLAXGPSXPRXPPXPPXPXP 1539
++P + S P +P P+A S P P PP P P
Sbjct: 1060 SKPAPSTVTSAASSPSNIS--KPSAPVANNVSKPSAVPPPPPPPP 1102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,387,013
Number of Sequences: 5004
Number of extensions: 74564
Number of successful extensions: 269
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 891978300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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