Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_E10_e653_10.seq
(1582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81523-3|CAB04242.1| 163|Caenorhabditis elegans Hypothetical pr... 119 5e-27
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 38 0.015
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 34 0.32
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 33 0.42
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 33 0.56
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 31 1.7
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 31 1.7
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 31 1.7
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 31 2.2
Z93377-1|CAB07573.1| 340|Caenorhabditis elegans Hypothetical pr... 31 3.0
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 31 3.0
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 31 3.0
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 30 3.9
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 30 3.9
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 30 5.2
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 30 5.2
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 30 5.2
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 30 5.2
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 30 5.2
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 30 5.2
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 29 6.9
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 6.9
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 6.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.9
AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical... 29 6.9
AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical... 29 6.9
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 29 9.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 9.1
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 29 9.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 9.1
>Z81523-3|CAB04242.1| 163|Caenorhabditis elegans Hypothetical
protein F32H2.2 protein.
Length = 163
Score = 119 bits (287), Expect = 5e-27
Identities = 50/77 (64%), Positives = 62/77 (80%)
Frame = +2
Query: 368 ETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREPEYARYLK 547
E+ E + RF+VE EFVQ LANPNY++FLAQRGY KE+ FVNYLKYL YW++P+YAR LK
Sbjct: 2 ESVESEKTRFEVECEFVQALANPNYLNFLAQRGYFKEEYFVNYLKYLLYWKDPQYARCLK 61
Query: 548 YPMCLHFLELMQHEAFR 598
+P CLH LE +Q + FR
Sbjct: 62 FPQCLHMLEALQSQQFR 78
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical protein
Y49E10.10 protein.
Length = 425
Score = 38.3 bits (85), Expect = 0.015
Identities = 26/96 (27%), Positives = 28/96 (29%), Gaps = 1/96 (1%)
Frame = +3
Query: 1269 PGPXPSPPGXPXXXDPPPXXHNAPRRXXPFSPXXXXXGLGAPXSXXAXXXXGVXCPXLXP 1448
P P P P PPP AP +P V P P
Sbjct: 176 PPPTTKAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNP 235
Query: 1449 PXXXXXSAXHXTGXRXLXXPXAPPP-PXPXPXPPXP 1553
P +A T P AP P P P P PP P
Sbjct: 236 PAPENTTAKVETTKPTKAAPPAPTPVPNPVPSPPPP 271
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 33.9 bits (74), Expect = 0.32
Identities = 28/110 (25%), Positives = 30/110 (27%), Gaps = 4/110 (3%)
Frame = +3
Query: 1245 PXXRPXFXPGPXPSPPGXPXXXDPPPXXHNAPRRXXPFSPXX----XXXGLGAPXSXXAX 1412
P P PGP P PP DP N P P P G P
Sbjct: 932 PNPIPKPNPGPGPGPPSPNGPSDPNKPSPNGPSPNGPNGPSDPNKPGPSGPNGPSDPNKP 991
Query: 1413 XXXGVXCPXLXPPXXXXXSAXHXTGXRXLXXPXAPPPPXPXPXPPXPSTP 1562
G P P + G P P P P P P P+ P
Sbjct: 992 SPNGPSDPVKPSPSGPSPNGPSPNG----PSPNGPSPNGPSPNGPTPNWP 1037
Score = 29.1 bits (62), Expect = 9.1
Identities = 24/103 (23%), Positives = 27/103 (26%), Gaps = 1/103 (0%)
Frame = +3
Query: 1257 PXFXPGPXPSPPGXPXXXDPPPXXHNAPRRXXPFSPX-XXXXGLGAPXSXXAXXXXGVXC 1433
P P P P P P P P + P + P P G P G
Sbjct: 928 PIPVPNPIPKPNPGPGPGPPSPNGPSDPNKPSPNGPSPNGPNGPSDPNKPGPSGPNGPSD 987
Query: 1434 PXLXPPXXXXXSAXHXTGXRXLXXPXAPPPPXPXPXPPXPSTP 1562
P P P P P P P P P+ P
Sbjct: 988 PNKPSPNGPSDPVKPSPSG---PSPNGPSPNGPSPNGPSPNGP 1027
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical protein
Y48E1B.1 protein.
Length = 497
Score = 33.5 bits (73), Expect = 0.42
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 1506 PXAPPPPXPXPXPPXPSTP 1562
P PPPP P P PP P TP
Sbjct: 355 PAPPPPPPPPPPPPPPQTP 373
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 33.1 bits (72), Expect = 0.56
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 1212 GPPQGXTXXXGPXXRPXFXPGPX-PSPPGXPXXXDPPPXXHNAP 1340
GPPQG GP P PG P P G P PPP AP
Sbjct: 424 GPPQGGPGGFGPP--PPGGPGAYGPPPTGFPPVGAPPPGAAGAP 465
Score = 30.7 bits (66), Expect = 3.0
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +3
Query: 1215 PPQGXTXXXGPXXRPXFXPGPX-PSPPGXPXXXDPPP 1322
PP G G P PG P PPG P PPP
Sbjct: 412 PPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPP 448
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.5 bits (68), Expect = 1.7
Identities = 28/111 (25%), Positives = 31/111 (27%), Gaps = 2/111 (1%)
Frame = -1
Query: 1582 GXXXXXSGVDGXGGXGXGXGGGGAXGXXRXRXPVXXXAEXXXXXGGXRXGXXTP--XXXX 1409
G SG G G G GGG A G GG G +
Sbjct: 46 GGNTGGSGFGGGNTGGSGFGGGKAGGSGFGGGNTCGSGFGGGSTGGSPYGGASSGFGGST 105
Query: 1408 AXXEXGAPNPXXXXXGEXGXXRRGALXXFGGGSXXXGXPGGXGLGPGXKXG 1256
A G+ G G G+ FG G G G G G G G
Sbjct: 106 ATSGFGSGEKSSAFGGSGGFG--GSATGFGSGGGSFGG-GNSGFGEGGHGG 153
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 31.5 bits (68), Expect = 1.7
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +3
Query: 1224 GXTXXXGPXXRPXFXPGPXPSPPGXPXXXDPPPXXHNAPRRXXPFSPXXXXXGL 1385
G + P P P PP P PPP APRR SP GL
Sbjct: 299 GASPSVSPASTSPSGPAPSIPPPRPPALAPPPPV---APRRNPVVSPKNSTAGL 349
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate adaptor
protein CED-6 protein.
Length = 492
Score = 31.5 bits (68), Expect = 1.7
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +3
Query: 1224 GXTXXXGPXXRPXFXPGPXPSPPGXPXXXDPPPXXHNAPRRXXPFSPXXXXXGL 1385
G + P P P PP P PPP APRR SP GL
Sbjct: 299 GASPSVSPASTSPSGPAPSIPPPRPPALAPPPPV---APRRNPVVSPKNSTAGL 349
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.1 bits (67), Expect = 2.2
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 1257 PXFXPGPXPSPPGXPXXXDPPPXXHNAPRR 1346
P PGP +PPG P PP H P R
Sbjct: 76 PSDLPGPSGAPPGPPHPSGPPHRPHPHPSR 105
Score = 29.1 bits (62), Expect = 9.1
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +3
Query: 1218 PQGXTXXXGPXXRPXFXPGPXPSPPGXPXXXDPPPXXHNAPRR 1346
PQG + GP P PGP P P G P P P P R
Sbjct: 73 PQGPSDLPGPSGAP---PGP-PHPSGPPHRPHPHPSRRPRPTR 111
>Z93377-1|CAB07573.1| 340|Caenorhabditis elegans Hypothetical protein
F13A7.1 protein.
Length = 340
Score = 30.7 bits (66), Expect = 3.0
Identities = 22/97 (22%), Positives = 28/97 (28%), Gaps = 2/97 (2%)
Frame = -1
Query: 1582 GXXXXXSGVDGXGGXGXG--XGGGGAXGXXRXRXPVXXXAEXXXXXGGXRXGXXTPXXXX 1409
G S V G GG G G GGG A + + GG +
Sbjct: 133 GSAVQGSAVQGAGGGGGGASAGGGAAGAGGASQMTAAQGSAAQGAGGGGAVSQISAAPGS 192
Query: 1408 AXXEXGAPNPXXXXXGEXGXXRRGALXXFGGGSXXXG 1298
GAP G G + ++ G G G
Sbjct: 193 MAQGVGAPGSAAQGGGAQGPVSQISVTQGGRGGGTAG 229
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 30.7 bits (66), Expect = 3.0
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 1506 PXAPPPPXPXPXPPXPSTP 1562
P APPPP P P PP P P
Sbjct: 138 PAAPPPPPP-PPPPAPEAP 155
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 30.7 bits (66), Expect = 3.0
Identities = 34/131 (25%), Positives = 35/131 (26%), Gaps = 8/131 (6%)
Frame = -1
Query: 1582 GXXXXXSGVDGXGGXGXGXGGGGAXGXXRXRXPVXXXAEXXXXXGGXRXGXXTPXXXXAX 1403
G G DG GG G G GGGG G GG G
Sbjct: 115 GGGGYGGGGDGGGGYG-GYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGG 173
Query: 1402 XEXGAPNPXXXXXGEXGXXRRGALXXFGGGSXXXGXPGGX--------GLGPGXKXGRXX 1247
G + G G G GGG G GG G GP G
Sbjct: 174 GYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSGGYGGGY 233
Query: 1246 GPXXXVXPWGG 1214
GP GG
Sbjct: 234 GPGGGYGMGGG 244
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical protein
H06A10.2 protein.
Length = 305
Score = 30.3 bits (65), Expect = 3.9
Identities = 28/95 (29%), Positives = 30/95 (31%), Gaps = 1/95 (1%)
Frame = +3
Query: 1281 PSPPGXPXXXDPPPXXHNAPRRXXPFSPXXXXXGLGAPXSXXAXXXXGVXCPXLXP-PXX 1457
P PPG P P P P +P G AP CP P P
Sbjct: 109 PGPPG-PGGSPGKPGKPGKP--GAPGAPGAAGKGASAPCEAKTPPPCQP-CPAGPPGPPG 164
Query: 1458 XXXSAXHXTGXRXLXXPXAPPPPXPXPXPPXPSTP 1562
A P AP PP P P PP P+ P
Sbjct: 165 PDGPAGPAGPDGEAGSPAAPSPPGP-PGPPGPAGP 198
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 30.3 bits (65), Expect = 3.9
Identities = 23/96 (23%), Positives = 26/96 (27%), Gaps = 1/96 (1%)
Frame = +3
Query: 1272 GPXPSPPGXPXXXDPPPXXHNAPRRXXPFSPXXXXXGLGAPXSXXAXXXXGVXCPXLXPP 1451
G P+ P P P P AP P AP + A G P
Sbjct: 100 GAAPTAPAEPVPA-PAPEPEAAPAPAPVAEPALAPSPDAAPAADGASYSAGAAAPAGGAS 158
Query: 1452 XXXXXSAXHXTGXRXLXXPXAPPPPXPXPXP-PXPS 1556
P AP P P P P P P+
Sbjct: 159 YPAKKRRVARDYAEGGAAPAAPAEPAPEPAPAPAPA 194
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 29.9 bits (64), Expect = 5.2
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = +3
Query: 1215 PPQGXTXXXGPXXRPXFXPG-PXPSPPGX---PXXXDPPPXXHNAPRRXXPFSP 1364
PPQG GP P PG P PPG P PPP AP P +P
Sbjct: 713 PPQGPPGPPGPQQHPGPYPGYPGYGPPGAMRPPAGFAPPP---GAPYGYPPGAP 763
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical protein
R144.4a protein.
Length = 360
Score = 29.9 bits (64), Expect = 5.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 1506 PXAPPPPXPXPXPPXPSTP 1562
P PPPP P P PP S P
Sbjct: 4 PPPPPPPPPPPPPPAASAP 22
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical protein
R144.4b protein.
Length = 362
Score = 29.9 bits (64), Expect = 5.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 1506 PXAPPPPXPXPXPPXPSTP 1562
P PPPP P P PP S P
Sbjct: 4 PPPPPPPPPPPPPPAASAP 22
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like (grd
related) protein16, isoform b protein.
Length = 453
Score = 29.9 bits (64), Expect = 5.2
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +3
Query: 1431 CPXLXPPXXXXXSAXHXTGXRXLXXPXAPPPPXPXPXP 1544
C PP A G P PPPP P P P
Sbjct: 35 CGGGAPPCSSSSYATGGGGGSYAAAPALPPPPPPPPAP 72
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like (grd
related) protein16, isoform a protein.
Length = 393
Score = 29.9 bits (64), Expect = 5.2
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +3
Query: 1431 CPXLXPPXXXXXSAXHXTGXRXLXXPXAPPPPXPXPXP 1544
C PP A G P PPPP P P P
Sbjct: 35 CGGGAPPCSSSSYATGGGGGSYAAAPALPPPPPPPPAP 72
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 29.9 bits (64), Expect = 5.2
Identities = 26/107 (24%), Positives = 27/107 (25%), Gaps = 1/107 (0%)
Frame = -1
Query: 1561 GVDGXGGXGXGXGGGGAXGXXRXRXPVXXXAEXXXXXGGXRXGXXTPXXXXAXXEXGAPN 1382
G GG G G G G G A GG G G+ N
Sbjct: 89 GSGNAGGTGFGSGNAGGTGFGSGN------AGGTGFGGGNAGGTGFGSGNAGGTGLGSGN 142
Query: 1381 PXXXXXGEXGXXRRG-ALXXFGGGSXXXGXPGGXGLGPGXKXGRXXG 1244
G G GG G GG G G G G G
Sbjct: 143 AGGTGFGSGNAGGTGFGSGNAGGTGFGSGKAGGTGFGSGKAGGTGFG 189
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical protein
ZK1010.5 protein.
Length = 756
Score = 29.5 bits (63), Expect = 6.9
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +3
Query: 1506 PXAPPPPXPXPXP-PXPSTPLS 1568
P PPPP P P P P P P++
Sbjct: 637 PQPPPPPSPSPEPEPEPKPPVT 658
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 6.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 1482 TGXRXLXXPXAPPPPXPXPXPPXPSTPLS 1568
+G P A PPP P P PP P+S
Sbjct: 290 SGGGGYSAPAAAPPPPPPPPPPPAPAPVS 318
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 6.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 1482 TGXRXLXXPXAPPPPXPXPXPPXPSTPLS 1568
+G P A PPP P P PP P+S
Sbjct: 290 SGGGGYSAPAAAPPPPPPPPPPPAPAPVS 318
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 6.9
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +1
Query: 1441 SPPXXXXXXQPXTPLAXGPSXPRXPPXPPXPXPXPXXRP 1557
SPP P P A P PR PP P P P
Sbjct: 246 SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 6.9
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +1
Query: 1441 SPPXXXXXXQPXTPLAXGPSXPRXPPXPPXPXPXPXXRP 1557
SPP P P A P PR PP P P P
Sbjct: 267 SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 6.9
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +1
Query: 1441 SPPXXXXXXQPXTPLAXGPSXPRXPPXPPXPXPXPXXRP 1557
SPP P P A P PR PP P P P
Sbjct: 252 SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290
>AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15a protein.
Length = 933
Score = 29.5 bits (63), Expect = 6.9
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +3
Query: 1434 PXLXP-PXXXXXSAXHXTGXRXLXXPXAPPPPXPXPXPPXPSTPLS 1568
P L P P A H L P PPPP P P P + L+
Sbjct: 764 PRLPPKPSVAQTIAMHSAPPSPLTAPIPPPPPPPPPMLPPQQSQLA 809
>AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15b protein.
Length = 832
Score = 29.5 bits (63), Expect = 6.9
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +3
Query: 1434 PXLXP-PXXXXXSAXHXTGXRXLXXPXAPPPPXPXPXPPXPSTPLS 1568
P L P P A H L P PPPP P P P + L+
Sbjct: 663 PRLPPKPSVAQTIAMHSAPPSPLTAPIPPPPPPPPPMLPPQQSQLA 708
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical protein
T28C6.1 protein.
Length = 281
Score = 29.1 bits (62), Expect = 9.1
Identities = 32/124 (25%), Positives = 37/124 (29%), Gaps = 1/124 (0%)
Frame = -1
Query: 1582 GXXXXXSGVDGXGGXGXGXGG-GGAXGXXRXRXPVXXXAEXXXXXGGXRXGXXTPXXXXA 1406
G SG G GG G G GG GG G GG + G +
Sbjct: 72 GGGRGGSGGAGAGGSGSGSGGWGGQDGG-------SSAGGWGGSQGGSQGGSSGGWGGSS 124
Query: 1405 XXEXGAPNPXXXXXGEXGXXRRGALXXFGGGSXXXGXPGGXGLGPGXKXGRXXGPXXXVX 1226
+ G+ + G G GG G GG G G G G G
Sbjct: 125 RSDSGS-GQGGWGGQQGGNSNAGGWGGSQGGQNGGGGRGGSG-GQGGWGGSQDG--GSQG 180
Query: 1225 PWGG 1214
WGG
Sbjct: 181 GWGG 184
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 9.1
Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = +3
Query: 1215 PPQGXTXXXGPXXRPXFXPGPXPS---PPGXPXXXDPPPXXHNAPRRXXPFSP 1364
PP G T GP P P P PS PPG PPP P P P
Sbjct: 302 PPPGRTP--GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 352
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 29.1 bits (62), Expect = 9.1
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +1
Query: 1432 AXXSPPXXXXXXQP--XTPLAXGPSXPRXPPXPPXPXPXPXXRP 1557
A S P P TPLA P P PP P P RP
Sbjct: 303 ATTSRPTTPSPTTPRATTPLATTPLATTRAPLPPSPPPRTSKRP 346
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 9.1
Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = +3
Query: 1215 PPQGXTXXXGPXXRPXFXPGPXPS---PPGXPXXXDPPPXXHNAPRRXXPFSP 1364
PP G T GP P P P PS PPG PPP P P P
Sbjct: 312 PPPGRTP--GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 362
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,824,759
Number of Sequences: 27780
Number of extensions: 521421
Number of successful extensions: 4133
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3367
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4577094018
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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