Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E09_e645_09.seq
         (1518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    59   2e-09
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    31   0.42 
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   6.8  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 30/49 (61%), Positives = 34/49 (69%)
 Frame = +3

Query: 402 WDDXEXIXHYTFXNELXVATEEHPXLLTEAALNXKAFXEXXDT*LLFET 548
           WDD E I H+TF NEL VA EEHP LLTEA LN K+  E   T ++FET
Sbjct: 79  WDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKM-TQIIFET 126



 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 33/75 (44%), Positives = 39/75 (52%)
 Frame = +2

Query: 164 DEEXAXXIVYYGSXMCKXGXXGDDAXLAVFSSLSWGDLXTSXVMXXMGH*GLLRRLMRHS 343
           +EE A  ++  GS MCK G  GDDA  AVF S+  G      +M  MG           S
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIV-GRPRHHGIMVGMGQKDSYVGDEAQS 60

Query: 344 XRTGMLTLXYPIEHG 388
            R G+LTL YPIEHG
Sbjct: 61  KR-GILTLKYPIEHG 74


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 402 WDDXEXIXHYTFXNE-LXVATEEHPXLLTEAAL 497
           W D E I  Y + ++ L    EEHP LLTE  L
Sbjct: 83  WSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 185 IVYYGSXMCKXGXXGDDAXLAVFSSLSWGD 274
           ++Y GS  C+     DD    VF SL +GD
Sbjct: 814 LLYAGSENCEKNPFADDCRDVVFVSLDFGD 843


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,801
Number of Sequences: 5004
Number of extensions: 19346
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 850352646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)