Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_E09_e645_09.seq
(1518 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 3e-09
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 3e-09
SB_56| Best HMM Match : Actin (HMM E-Value=0) 61 3e-09
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 61 3e-09
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 3e-09
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 7e-07
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 31 3.2
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 60.9 bits (141), Expect = 3e-09
Identities = 43/117 (36%), Positives = 49/117 (41%)
Frame = +3
Query: 198 GPECAKXGXXETTLPSPYFPXYRGATXSPAAXXXXWXTKDXYVG**GTAAGRVCXHSXTX 377
G K G P FP G KD YVG + +
Sbjct: 14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM-GQKDSYVGDEAQSKRGILTLKYPI 72
Query: 378 SNTAXXPXWDDXEXIXHYTFXNELXVATEEHPXLLTEAALNXKAFXEXXDT*LLFET 548
+ WDD E I H+TF NEL VA EEHP LLTEA LN KA E T ++FET
Sbjct: 73 EH-GIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM-TQIMFET 127
Score = 54.4 bits (125), Expect = 2e-07
Identities = 36/78 (46%), Positives = 40/78 (51%)
Frame = +2
Query: 164 DEEXAXXIVYYGSXMCKXGXXGDDAXLAVFSSLSWGDLXTSXVMXXMGH*GLLRRLMRHS 343
D+E A +V GS MCK G GDDA AVF S+ G VM MG S
Sbjct: 3 DDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIV-GRPRHQGVMVGMGQKDSYVGDEAQS 61
Query: 344 XRTGMLTLXYPIEHGXXT 397
R G+LTL YPIEHG T
Sbjct: 62 KR-GILTLKYPIEHGIVT 78
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 60.9 bits (141), Expect = 3e-09
Identities = 43/117 (36%), Positives = 49/117 (41%)
Frame = +3
Query: 198 GPECAKXGXXETTLPSPYFPXYRGATXSPAAXXXXWXTKDXYVG**GTAAGRVCXHSXTX 377
G K G P FP G KD YVG + +
Sbjct: 13 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM-GQKDSYVGDEAQSKRGILTLKYPI 71
Query: 378 SNTAXXPXWDDXEXIXHYTFXNELXVATEEHPXLLTEAALNXKAFXEXXDT*LLFET 548
+ WDD E I H+TF NEL VA EEHP LLTEA LN KA E T ++FET
Sbjct: 72 EH-GIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM-TQIMFET 126
Score = 51.6 bits (118), Expect = 2e-06
Identities = 34/78 (43%), Positives = 40/78 (51%)
Frame = +2
Query: 164 DEEXAXXIVYYGSXMCKXGXXGDDAXLAVFSSLSWGDLXTSXVMXXMGH*GLLRRLMRHS 343
+++ A +V GS MCK G GDDA AVF S+ G VM MG S
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV-GRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 344 XRTGMLTLXYPIEHGXXT 397
R G+LTL YPIEHG T
Sbjct: 61 KR-GILTLKYPIEHGIVT 77
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 60.9 bits (141), Expect = 3e-09
Identities = 43/117 (36%), Positives = 49/117 (41%)
Frame = +3
Query: 198 GPECAKXGXXETTLPSPYFPXYRGATXSPAAXXXXWXTKDXYVG**GTAAGRVCXHSXTX 377
G K G P FP G KD YVG + +
Sbjct: 13 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM-GQKDSYVGDEAQSKRGILTLKYPI 71
Query: 378 SNTAXXPXWDDXEXIXHYTFXNELXVATEEHPXLLTEAALNXKAFXEXXDT*LLFET 548
+ WDD E I H+TF NEL VA EEHP LLTEA LN KA E T ++FET
Sbjct: 72 EH-GIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM-TQIMFET 126
Score = 52.8 bits (121), Expect = 7e-07
Identities = 35/78 (44%), Positives = 40/78 (51%)
Frame = +2
Query: 164 DEEXAXXIVYYGSXMCKXGXXGDDAXLAVFSSLSWGDLXTSXVMXXMGH*GLLRRLMRHS 343
++E A +V GS MCK G GDDA AVF S+ G VM MG S
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV-GRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 344 XRTGMLTLXYPIEHGXXT 397
R G+LTL YPIEHG T
Sbjct: 61 KR-GILTLKYPIEHGIVT 77
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 60.9 bits (141), Expect = 3e-09
Identities = 43/117 (36%), Positives = 49/117 (41%)
Frame = +3
Query: 198 GPECAKXGXXETTLPSPYFPXYRGATXSPAAXXXXWXTKDXYVG**GTAAGRVCXHSXTX 377
G K G P FP G KD YVG + +
Sbjct: 14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM-GQKDSYVGDEAQSKRGILTLKYPI 72
Query: 378 SNTAXXPXWDDXEXIXHYTFXNELXVATEEHPXLLTEAALNXKAFXEXXDT*LLFET 548
+ WDD E I H+TF NEL VA EEHP LLTEA LN KA E T ++FET
Sbjct: 73 EH-GIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM-TQIMFET 127
Score = 53.2 bits (122), Expect = 5e-07
Identities = 35/78 (44%), Positives = 40/78 (51%)
Frame = +2
Query: 164 DEEXAXXIVYYGSXMCKXGXXGDDAXLAVFSSLSWGDLXTSXVMXXMGH*GLLRRLMRHS 343
D++ A +V GS MCK G GDDA AVF S+ G VM MG S
Sbjct: 3 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV-GRPRHQGVMVGMGQKDSYVGDEAQS 61
Query: 344 XRTGMLTLXYPIEHGXXT 397
R G+LTL YPIEHG T
Sbjct: 62 KR-GILTLKYPIEHGIVT 78
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 60.9 bits (141), Expect = 3e-09
Identities = 43/117 (36%), Positives = 49/117 (41%)
Frame = +3
Query: 198 GPECAKXGXXETTLPSPYFPXYRGATXSPAAXXXXWXTKDXYVG**GTAAGRVCXHSXTX 377
G K G P FP G KD YVG + +
Sbjct: 14 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM-GQKDSYVGDEAQSKRGILTLKYPI 72
Query: 378 SNTAXXPXWDDXEXIXHYTFXNELXVATEEHPXLLTEAALNXKAFXEXXDT*LLFET 548
+ WDD E I H+TF NEL VA EEHP LLTEA LN KA E T ++FET
Sbjct: 73 EH-GIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM-TQIMFET 127
Score = 54.4 bits (125), Expect = 2e-07
Identities = 35/79 (44%), Positives = 41/79 (51%)
Frame = +2
Query: 161 ADEEXAXXIVYYGSXMCKXGXXGDDAXLAVFSSLSWGDLXTSXVMXXMGH*GLLRRLMRH 340
AD++ A ++ GS MCK G GDDA AVF S+ G VM MG
Sbjct: 2 ADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIV-GRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 341 SXRTGMLTLXYPIEHGXXT 397
S R G+LTL YPIEHG T
Sbjct: 61 SKR-GILTLKYPIEHGIVT 78
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 52.8 bits (121), Expect = 7e-07
Identities = 34/78 (43%), Positives = 40/78 (51%)
Frame = +2
Query: 164 DEEXAXXIVYYGSXMCKXGXXGDDAXLAVFSSLSWGDLXTSXVMXXMGH*GLLRRLMRHS 343
D++ A ++ GS MCK G GDDA AVF S+ G VM MG S
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIV-GRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 344 XRTGMLTLXYPIEHGXXT 397
R G+LTL YPIEHG T
Sbjct: 61 KR-GILTLKYPIEHGIVT 77
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 30.7 bits (66), Expect = 3.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 402 WDDXEXIXHYTFXNELXVATEEHPXLLTEAALNXKAFXEXXDT*LLFE 545
WD E I Y + + + HP L++EAA N + E T L+FE
Sbjct: 12 WDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKL-TELMFE 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,388,270
Number of Sequences: 59808
Number of extensions: 168730
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4929866340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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