Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E07_e629_09.seq
         (1580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    62   2e-10
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    62   2e-10

>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 28/52 (53%), Positives = 37/52 (71%)
 Frame = +3

Query: 174 HPNIQISRRXPNLQVIKAMQSLKSXGYVKEQFAWRHFYWYLTNEGIEYLKNF 329
           HP + +    PNLQVIKA QSL S GY+K ++ W  FY+ LTNEG+EYL+ +
Sbjct: 32  HPEVGV----PNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREY 79



 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 20/35 (57%), Positives = 31/35 (88%)
 Frame = +2

Query: 89  MLMPKQNRVSIYEYLFXEGVMVAKKDYHAPKHPDL 193
           ML+PK+NR +I++ LF +GV+VAKKD++ PKHP++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEV 35



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 23/60 (38%), Positives = 29/60 (48%)
 Frame = +1

Query: 223 KLCNHLNLXDMLRNSSHGGIFTGI*QMRVLNTLRIFLHLPPEIVPATLKRSVRTETVRRG 402
           K C  L+    L+   + G F        +  LR +LHLP E+VPAT KR VR    R G
Sbjct: 44  KACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPRAG 103


>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 28/52 (53%), Positives = 37/52 (71%)
 Frame = +3

Query: 174 HPNIQISRRXPNLQVIKAMQSLKSXGYVKEQFAWRHFYWYLTNEGIEYLKNF 329
           HP + +    PNLQVIKA QSL S GY+K ++ W  FY+ LTNEG+EYL+ +
Sbjct: 32  HPEVGV----PNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREY 79



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 20/35 (57%), Positives = 31/35 (88%)
 Frame = +2

Query: 89  MLMPKQNRVSIYEYLFXEGVMVAKKDYHAPKHPDL 193
           ML+PK+NR +I++ LF +GV+VAKKD++ PKHP++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEV 35



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 23/60 (38%), Positives = 29/60 (48%)
 Frame = +1

Query: 223 KLCNHLNLXDMLRNSSHGGIFTGI*QMRVLNTLRIFLHLPPEIVPATLKRSVRTETVRRG 402
           K C  L+    L+   + G F        +  LR +LHLP E+VPAT KR VR    R G
Sbjct: 44  KACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPRAG 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,586,412
Number of Sequences: 5004
Number of extensions: 55608
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 891978300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)