Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E07_e629_09.seq
         (1580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389...    75   2e-13
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699...    75   2e-13
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191...    74   4e-13
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364...    31   2.5  

>04_03_0970 +
           21338072-21338074,21338192-21338240,21338688-21338970,
           21339570-21339705,21339761-21339769
          Length = 159

 Score = 74.9 bits (176), Expect = 2e-13
 Identities = 33/57 (57%), Positives = 43/57 (75%)
 Frame = +3

Query: 174 HPNIQISRRXPNLQVIKAMQSLKSXGYVKEQFAWRHFYWYLTNEGIEYLKNFPALTS 344
           HP I +    PNLQVIK MQS KS  YV+E F+W+++YWYLTN+GIE+L+N+  L S
Sbjct: 32  HPQIDV----PNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPS 84



 Score = 50.0 bits (114), Expect = 5e-06
 Identities = 20/36 (55%), Positives = 28/36 (77%)
 Frame = +2

Query: 89  MLMPKQNRVSIYEYLFXEGVMVAKKDYHAPKHPDLE 196
           M++PK+NR  I +YLF EGV+ AKKDY+  KHP ++
Sbjct: 1   MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID 36



 Score = 33.5 bits (73), Expect = 0.47
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +1

Query: 319 LRIFLHLPPEIVPATLKRSVR 381
           LR +L+LP EIVPATLK+S R
Sbjct: 76  LRNYLNLPSEIVPATLKKSAR 96


>02_04_0177 +
           20669053-20669055,20669150-20669198,20669680-20669962,
           20670526-20670661,20671014-20671094
          Length = 183

 Score = 74.9 bits (176), Expect = 2e-13
 Identities = 33/57 (57%), Positives = 43/57 (75%)
 Frame = +3

Query: 174 HPNIQISRRXPNLQVIKAMQSLKSXGYVKEQFAWRHFYWYLTNEGIEYLKNFPALTS 344
           HP I +    PNLQVIK MQS KS  YV+E F+W+++YWYLTN+GIE+L+N+  L S
Sbjct: 32  HPQIDV----PNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPS 84



 Score = 50.0 bits (114), Expect = 5e-06
 Identities = 20/36 (55%), Positives = 28/36 (77%)
 Frame = +2

Query: 89  MLMPKQNRVSIYEYLFXEGVMVAKKDYHAPKHPDLE 196
           M++PK+NR  I +YLF EGV+ AKKDY+  KHP ++
Sbjct: 1   MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID 36



 Score = 33.5 bits (73), Expect = 0.47
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +1

Query: 319 LRIFLHLPPEIVPATLKRSVR 381
           LR +L+LP EIVPATLK+S R
Sbjct: 76  LRNYLNLPSEIVPATLKKSAR 96


>01_07_0270 -
           42417782-42417850,42418207-42418342,42418826-42419108,
           42419459-42419507,42419614-42419616
          Length = 179

 Score = 73.7 bits (173), Expect = 4e-13
 Identities = 31/57 (54%), Positives = 43/57 (75%)
 Frame = +3

Query: 174 HPNIQISRRXPNLQVIKAMQSLKSXGYVKEQFAWRHFYWYLTNEGIEYLKNFPALTS 344
           HP + +    PNL+VIK MQS KS  YV+E F+W+H+YWYLTN+GIE+L+++  L S
Sbjct: 32  HPKVDV----PNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEHLRSYLNLPS 84



 Score = 46.0 bits (104), Expect = 8e-05
 Identities = 19/36 (52%), Positives = 27/36 (75%)
 Frame = +2

Query: 89  MLMPKQNRVSIYEYLFXEGVMVAKKDYHAPKHPDLE 196
           M++ K+NR  I +YLF EGV+ AKKDY+  KHP ++
Sbjct: 1   MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD 36



 Score = 30.3 bits (65), Expect = 4.4
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 319 LRIFLHLPPEIVPATLKRSVRTETVRRGAVGXPDAP 426
           LR +L+LP E+VP TLK+S +  +   G+    D P
Sbjct: 76  LRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRP 111


>03_01_0474 +
           3646724-3646789,3648952-3649067,3649547-3649595,
           3649641-3649697,3649743-3650993
          Length = 512

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 428 AGASGXPTAPRRTVSVRTDLFRVAGTISGGKCRKI 324
           A A G P  P   + VR  L+    T  GG CR +
Sbjct: 3   AAAGGAPPRPAAGIRVRVPLYMTGQTYQGGSCRGV 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,653,197
Number of Sequences: 37544
Number of extensions: 488368
Number of successful extensions: 1522
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5116529628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)