Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E07_e629_09.seq
         (1580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)                 75   2e-13

>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
          Length = 166

 Score = 74.9 bits (176), Expect = 2e-13
 Identities = 30/42 (71%), Positives = 37/42 (88%)
 Frame = +3

Query: 204 PNLQVIKAMQSLKSXGYVKEQFAWRHFYWYLTNEGIEYLKNF 329
           PNL VIKA+QSLKS GYV+E+F W+H+YW LTNEGI YL++F
Sbjct: 39  PNLHVIKALQSLKSRGYVEEKFCWKHYYWNLTNEGITYLRDF 80



 Score = 61.7 bits (143), Expect = 2e-09
 Identities = 26/39 (66%), Positives = 32/39 (82%)
 Frame = +2

Query: 89  MLMPKQNRVSIYEYLFXEGVMVAKKDYHAPKHPDLEKXP 205
           ML+PK+NRV IYEYLF EGV VAKKD+++PKH  +E  P
Sbjct: 1   MLIPKKNRVIIYEYLFKEGVCVAKKDFNSPKHTQIENVP 39



 Score = 39.1 bits (87), Expect = 0.010
 Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +1

Query: 319 LRIFLHLPPEIVPATLKRSV-RTETVR 396
           LR FLHLP EIVPATL+R V R ET R
Sbjct: 77  LRDFLHLPTEIVPATLRRQVTRAETAR 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,799,097
Number of Sequences: 59808
Number of extensions: 469230
Number of successful extensions: 1028
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5176359657
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)