Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E07_e629_09.seq
         (1580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...    69   9e-12
Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical pr...    30   5.2  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score = 68.9 bits (161), Expect = 9e-12
 Identities = 32/55 (58%), Positives = 40/55 (72%)
 Frame = +3

Query: 174 HPNIQISRRXPNLQVIKAMQSLKSXGYVKEQFAWRHFYWYLTNEGIEYLKNFPAL 338
           HPNI+      NL+VIK ++SL S   VKEQFAWRH+YWYLT+ GI YL+ + AL
Sbjct: 32  HPNIE---GVSNLEVIKTLKSLASRELVKEQFAWRHYYWYLTDAGILYLREYLAL 83



 Score = 49.6 bits (113), Expect = 6e-06
 Identities = 21/36 (58%), Positives = 27/36 (75%)
 Frame = +2

Query: 89  MLMPKQNRVSIYEYLFXEGVMVAKKDYHAPKHPDLE 196
           M +PK +   IYEYLF EGV VAKKD++A  HP++E
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIE 36


>Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical
           protein C49C3.11 protein.
          Length = 404

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 232 CIALITWRLGXLLEIWMFGCMVVFLSYHDS--LLEEVLIDRNTV 107
           C  +I WR   LL I+  GC++  L Y+D   +L+  L  + +V
Sbjct: 67  CRCVIVWRCLWLLIIFFVGCLIFTLFYYDDRYILQIQLFSKRSV 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,214,196
Number of Sequences: 27780
Number of extensions: 373729
Number of successful extensions: 759
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4577094018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)