Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E07_e629_09.seq
         (1580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...    74   2e-13
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...    74   2e-13
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...    73   7e-13

>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score = 74.1 bits (174), Expect = 2e-13
 Identities = 34/57 (59%), Positives = 41/57 (71%)
 Frame = +3

Query: 174 HPNIQISRRXPNLQVIKAMQSLKSXGYVKEQFAWRHFYWYLTNEGIEYLKNFPALTS 344
           HP I +    PNLQVIK MQS KS  YV+E FAW H+YW+LTNEGIE+L+ +  L S
Sbjct: 32  HPLIDV----PNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPS 84



 Score = 40.3 bits (90), Expect = 0.003
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = +2

Query: 89  MLMPKQNRVSIYEYLFXEGVMVAKKDYHAPKHP 187
           M++ + NR  I +YLF EGV  AKKD++  KHP
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHP 33



 Score = 31.5 bits (68), Expect = 1.6
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +1

Query: 319 LRIFLHLPPEIVPATLKRSVR 381
           LR +L+LP ++VPATLK+S +
Sbjct: 76  LRTYLNLPSDVVPATLKKSAK 96


>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score = 74.1 bits (174), Expect = 2e-13
 Identities = 34/57 (59%), Positives = 41/57 (71%)
 Frame = +3

Query: 174 HPNIQISRRXPNLQVIKAMQSLKSXGYVKEQFAWRHFYWYLTNEGIEYLKNFPALTS 344
           HP I +    PNLQVIK MQS KS  YV+E FAW H+YW+LTNEGIE+L+ +  L S
Sbjct: 32  HPLIDV----PNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPS 84



 Score = 43.6 bits (98), Expect = 4e-04
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = +2

Query: 89  MLMPKQNRVSIYEYLFXEGVMVAKKDYHAPKHP 187
           M++ + NR  I +YLF EGV  AKKD++ PKHP
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHP 33



 Score = 31.5 bits (68), Expect = 1.6
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +1

Query: 319 LRIFLHLPPEIVPATLKRSVR 381
           LR +L+LP ++VPATLK+S +
Sbjct: 76  LRTYLNLPSDVVPATLKKSAK 96


>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 31/56 (55%), Positives = 39/56 (69%)
 Frame = +3

Query: 177 PNIQISRRXPNLQVIKAMQSLKSXGYVKEQFAWRHFYWYLTNEGIEYLKNFPALTS 344
           P   +    PNLQVIK MQS KS  YV+E FAW H+YW+LTNEGI++L+ +  L S
Sbjct: 30  PQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPS 85



 Score = 46.4 bits (105), Expect = 5e-05
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +2

Query: 89  MLMPKQNRVSIYEYLFXEGVMVAKKDYHAPKHPDLEKXP 205
           M++ + NR  I +YLF EGV+ AKKD++ P+HP +E  P
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVP 39



 Score = 31.1 bits (67), Expect = 2.1
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +1

Query: 310 LNTLRIFLHLPPEIVPATLKR 372
           ++ LR +L+LP EIVPATLK+
Sbjct: 74  IDFLRTYLNLPSEIVPATLKK 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,129,034
Number of Sequences: 28952
Number of extensions: 346666
Number of successful extensions: 890
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4260257664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)