Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_E06_e621_10.seq
(1496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688 50 4e-06
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242 48 1e-05
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509... 46 6e-05
05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118 44 4e-04
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251 43 5e-04
06_02_0097 + 11710560-11710859,11712605-11713270 41 0.003
05_01_0380 + 2978256-2979284 40 0.004
05_01_0382 + 2985526-2986659 38 0.016
05_01_0379 + 2975701-2976831 38 0.016
01_01_0147 - 1332752-1333447,1333557-1333739 38 0.016
05_01_0381 + 2981762-2982075,2982302-2982658,2982752-2982800 36 0.11
01_06_0794 + 32050413-32050523,32050663-32051391 34 0.25
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124... 31 1.8
02_02_0521 - 11156594-11156956,11157097-11157483,11158327-111583... 29 7.2
>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
Length = 308
Score = 50.4 bits (115), Expect = 4e-06
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 42 VKPGALPDLDDLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRLD-VCPXRRALFFGTRNY 218
V+ +L L+DLL+CPVC I QC GH +C CK R++ CP R R
Sbjct: 46 VELSSLTGLNDLLECPVCTNSMRPPILQCPNGHTICSNCKHRVENHCPTCRQELGNIRCL 105
Query: 219 AMEELIANVR 248
A+E++ +++
Sbjct: 106 ALEKVAESLQ 115
>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
Length = 417
Score = 48.4 bits (110), Expect = 1e-05
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Frame = +3
Query: 3 ELKDSLRXARRTVVKPGALPDLD-DLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRLDV- 176
+L ++ R V+K +D ++L CPVC++I +FQC+ GH VC C+ L
Sbjct: 11 KLGEAQHDGDRVVIKKRQSVSMDMEVLHCPVCFQILRPPVFQCDLGHLVCSPCRDNLPAG 70
Query: 177 --CPXRRALFFGT---RNYAMEELIANVRKLRAF 263
CP FGT R AME ++ +V A+
Sbjct: 71 GKCPSPSC--FGTPSVRCVAMERVVNSVEVACAY 102
>07_03_1564 +
27749899-27750166,27750431-27750507,27750923-27750950,
27751117-27751261,27751351-27751429,27751515-27751633,
27751732-27752073,27754807-27754896,27755730-27755955,
27756398-27756784,27757176-27757496
Length = 693
Score = 46.4 bits (105), Expect = 6e-05
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +3
Query: 45 KPGALP--DLDDLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRL-DVCPXRRALFFGTRN 215
KP A+ ++ +LL+CPVC I QC+ GH +C CK R+ + CP R R
Sbjct: 430 KPNAMVSGNVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRC 489
Query: 216 YAMEELIANV 245
A+E++ A++
Sbjct: 490 LALEKVAASL 499
>05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118
Length = 361
Score = 43.6 bits (98), Expect = 4e-04
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +3
Query: 48 PGALP---DLDDLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRL-DVCPXRRALFFGTRN 215
PG P + +LL+CPVC I QC GH +C CK R+ + CP R R
Sbjct: 85 PGGGPPATSVHELLECPVCTNSMFPPIHQCQNGHTLCSTCKARVHNRCPTCRQELGDIRC 144
Query: 216 YAMEEL 233
A+E++
Sbjct: 145 LALEKV 150
>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
Length = 347
Score = 43.2 bits (97), Expect = 5e-04
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 72 DLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRL-DVCPXRRALFFGTRNYAMEEL 233
+LL+CPVC I QC GH +C CK R+ + CP R R A+E++
Sbjct: 82 ELLECPVCTNSMYPPIHQCQNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKV 136
>06_02_0097 + 11710560-11710859,11712605-11713270
Length = 321
Score = 40.7 bits (91), Expect = 0.003
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +3
Query: 42 VKPGALPDLD-DLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRLD----VCPXRRALFFG 206
V+ G +D D+L C +C+E ++QC GH C C +L +C R A F
Sbjct: 72 VEGGLSVQIDPDVLDCSICFESLRPPLYQCQNGHVACFSCWSKLSNKCHIC-SRDAKF-- 128
Query: 207 TRNYAMEELIANVR 248
RN A+E+++ +++
Sbjct: 129 ARNIALEKIVESIK 142
>05_01_0380 + 2978256-2979284
Length = 342
Score = 40.3 bits (90), Expect = 0.004
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = +3
Query: 30 RRTVVKPGALPDLDDLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRL---DVCPXRRALF 200
R V G + D L+C VC+ IFQC GH VC C+ +L C R
Sbjct: 57 RAVVAVTGVTVEDADALECGVCFLPLRPPIFQCEVGHVVCSPCRDKLAPAGRCHVCRVAV 116
Query: 201 FG---TRNYAMEELIANVR 248
G R YA+E L+ +R
Sbjct: 117 AGGEYRRCYALERLVDAIR 135
>05_01_0382 + 2985526-2986659
Length = 377
Score = 38.3 bits (85), Expect = 0.016
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Frame = +3
Query: 27 ARRTVVKPGALPDLDDLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRL---DVCPXRRAL 197
AR V G + D L+C VC IFQC GH VC C+ +L C RA
Sbjct: 107 ARPVVAVAGVTVEDADALECGVCCLPLRPPIFQCEVGHVVCAPCRDKLAPAGRCHVCRAA 166
Query: 198 FFG---TRNYAMEELIANVR 248
G R +A+E L+ +R
Sbjct: 167 VAGGEYRRCHALERLVDAIR 186
>05_01_0379 + 2975701-2976831
Length = 376
Score = 38.3 bits (85), Expect = 0.016
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Frame = +3
Query: 72 DLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRL---DVCPXRRALFFG---TRNYAMEEL 233
D L+C VC+ + IFQC GH VC C+ L C R G R YA+E L
Sbjct: 121 DALECGVCFLLLRPPIFQCEVGHVVCAPCRDTLAPAGRCYVCRVAVAGGEYRRCYALERL 180
Query: 234 IANVR 248
+ +R
Sbjct: 181 VDAIR 185
>01_01_0147 - 1332752-1333447,1333557-1333739
Length = 292
Score = 38.3 bits (85), Expect = 0.016
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 72 DLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRLD-VCP 182
D L+CP+C+ +++ C GH C C +++ +CP
Sbjct: 44 DALECPICFVPFEDRVYMCKNGHAACGSCYAKMNTMCP 81
>05_01_0381 + 2981762-2982075,2982302-2982658,2982752-2982800
Length = 239
Score = 35.5 bits (78), Expect = 0.11
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 72 DLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRL 170
D L+C VC +FQC +GH VC C+ +L
Sbjct: 64 DALECGVCRLPLRPPVFQCEDGHVVCSPCRDKL 96
>01_06_0794 + 32050413-32050523,32050663-32051391
Length = 279
Score = 34.3 bits (75), Expect = 0.25
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +3
Query: 30 RRTVVKPGALPDLDDLLQCPVCYEIPSGQIFQCNEGHHVCDQC------KIRLDVCPXRR 191
+R+ V A DL+ +L C VC + QC GH +C C K R VC
Sbjct: 7 QRSSVATNATVDLE-VLDCTVCCHPLKPPVLQCGVGHVICSSCHGKLPDKNRCHVCAMDT 65
Query: 192 ALFFGTRNYAMEELIANV 245
A R +A+E+++ ++
Sbjct: 66 AY---NRCFAVEQILRSI 80
>01_01_0136 +
1237623-1237820,1238313-1239001,1239978-1240308,
1240614-1241351
Length = 651
Score = 31.5 bits (68), Expect = 1.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 75 LLQCPVCYEIPSGQIFQCNEGHHVCDQCK 161
LL C C + +F+C+E H VC C+
Sbjct: 390 LLHCHACLQPLKPPVFKCDEAHIVCSGCR 418
Score = 29.1 bits (62), Expect = 9.5
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +3
Query: 72 DLLQCPVCYEIPSGQIFQC-NEGHHVCDQCKIRL-DVCPXRRA-LFFGTRNYAMEELIA 239
++L+C VC+ + ++QC GH C C + C RA TR AME +A
Sbjct: 49 EVLECDVCFGPLTPPLYQCMRRGHITCSTCVAEMGQECQWCRAPEATTTRCRAMEHFLA 107
>02_02_0521 -
11156594-11156956,11157097-11157483,11158327-11158383,
11159671-11159970
Length = 368
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 117 IFQCNEGHHVCDQCKIRL-DVCPXRRALFFGTRNYAMEEL 233
+ +C GH +C CK R+ + CP R R A+E++
Sbjct: 117 LLECQNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKV 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,208,860
Number of Sequences: 37544
Number of extensions: 189323
Number of successful extensions: 374
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4791670604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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