Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E06_e621_10.seq
         (1496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43575| Best HMM Match : Sina (HMM E-Value=0)                        57   3e-08
SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.59 
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)                   30   5.5  

>SB_43575| Best HMM Match : Sina (HMM E-Value=0)
          Length = 432

 Score = 57.2 bits (132), Expect = 3e-08
 Identities = 25/60 (41%), Positives = 34/60 (56%)
 Frame = +3

Query: 63  DLDDLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRLDVCPXRRALFFGTRNYAMEELIAN 242
           DL  + +CPVC++     I QC+ GH VC  C+ +L  CP  R      RN AME+ +AN
Sbjct: 30  DLTSIFECPVCFDYVLPPILQCSSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEK-VAN 88


>SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 33.1 bits (72), Expect = 0.59
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 57  LPDLDDLLQCPVCY-EIPSGQIFQCNEGHHVC-DQCKIRLDVCPXRR 191
           L  L+D L+C VC  E  +  +  C  GH VC +QC + L+ CP  R
Sbjct: 137 LSKLEDGLRCKVCMDEQINAVLIPC--GHMVCCEQCAMNLEACPVCR 181


>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 614

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 57  LPDLDDLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRLDVCPXRRALFFGTRNYAMEELI 236
           LP++  + QC +CY  P  ++    +G   C +C     V P  + +    R Y + +++
Sbjct: 257 LPNVQGVTQCEMCY--PMSKLLPSVQGVTQCPRCYPVSKVLPSVQGVTRCPRCYPVSKVL 314

Query: 237 ANVR 248
            NVR
Sbjct: 315 PNVR 318



 Score = 30.3 bits (65), Expect = 4.2
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +3

Query: 57  LPDLDDLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRLDVCPXRRALFFGTRNYAMEELI 236
           LP +  + QCP CY  P  ++    +G   C +C     V P  + +    R Y + +++
Sbjct: 352 LPGVQGVTQCPRCY--PMSEVLPSVQGVTQCPRCYPVSKVLPGVQGVTQCPRCYPVSKVL 409

Query: 237 ANVR---KLRAFKLRW 275
            +V+   +L + + RW
Sbjct: 410 PSVQGLSRLVSDRYRW 425



 Score = 29.9 bits (64), Expect = 5.5
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 57  LPDLDDLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRLDVCPXRRALFFGTRNYAMEELI 236
           LP +  + +CP CY  P  ++    +G   C +C     V P  + +      Y M +L+
Sbjct: 200 LPSVQGVTRCPRCY--PMSKVLPNVQGVTQCSRCYPVSKVLPSVQGVTQCEMCYPMSKLL 257

Query: 237 ANVR 248
            NV+
Sbjct: 258 PNVQ 261



 Score = 29.5 bits (63), Expect = 7.3
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 57  LPDLDDLLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRLDVCPXRRALFFGTRNYAMEELI 236
           LP +  + QCP CY  P  ++    +G   C +C     V P  R      R Y + +++
Sbjct: 276 LPSVQGVTQCPRCY--PVSKVLPSVQGVTRCPRCYPVSKVLPNVRGFTQCPRCYPVSKVL 333

Query: 237 ANVR 248
            +V+
Sbjct: 334 PSVQ 337


>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
          Length = 627

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
 Frame = +3

Query: 54  ALPDLDDLLQCPVC---YEIPSG-QIFQC-NE--GHHVCDQCK 161
           +L +++DL++CP C     +PSG ++F+C N+  G   C  CK
Sbjct: 451 SLAEMEDLVRCPSCEFAAVLPSGNKVFKCLNQKCGKETCRHCK 493


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,249,366
Number of Sequences: 59808
Number of extensions: 220306
Number of successful extensions: 463
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4847701901
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)