Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E06_e621_10.seq
         (1496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89792-1|AAB94380.1|  339|Caenorhabditis elegans seven-in-absent...    50   4e-06
AC024759-5|AAK68432.1|  419|Caenorhabditis elegans Hypothetical ...    50   4e-06
Z70681-2|CAA94578.2|  203|Caenorhabditis elegans Hypothetical pr...    33   0.69 
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    31   1.6  

>U89792-1|AAB94380.1|  339|Caenorhabditis elegans seven-in-absentia 
           protein homologue-1 protein.
          Length = 339

 Score = 50.0 bits (114), Expect = 4e-06
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = +3

Query: 75  LLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRLDVCPXRRALFFGTRNYAMEELIANVR 248
           + +CPVC E       QC+ GH VC  C+ +L  CP  R      RN  +E++   VR
Sbjct: 87  VFECPVCLEYMLPPYMQCSSGHLVCSNCRPKLQCCPTCRGPTPSVRNLGLEKIANTVR 144


>AC024759-5|AAK68432.1|  419|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.2 protein.
          Length = 419

 Score = 50.0 bits (114), Expect = 4e-06
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = +3

Query: 75  LLQCPVCYEIPSGQIFQCNEGHHVCDQCKIRLDVCPXRRALFFGTRNYAMEELIANVR 248
           + +CPVC E       QC+ GH VC  C+ +L  CP  R      RN  +E++   VR
Sbjct: 153 VFECPVCLEYMLPPYMQCSSGHLVCSNCRPKLQCCPTCRGPTPSVRNLGLEKIANTVR 210


>Z70681-2|CAA94578.2|  203|Caenorhabditis elegans Hypothetical
           protein C30F2.2 protein.
          Length = 203

 Score = 32.7 bits (71), Expect = 0.69
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = +3

Query: 57  LPDLDDLLQCPVCYEIPSGQIFQ-CNE--GHHVCDQCKIRLDVCP--XRRALFFGT-RNY 218
           LP++D   +CP C E       + C    GH +C +C+ ++  CP   R+  FFGT  NY
Sbjct: 2   LPNVD-FSRCPTCLEDYDDNSHRPCVGFCGHSICLKCQSKIVSCPLCKRKNAFFGTVINY 60

Query: 219 AMEELIANVRKL 254
            + +    +R+L
Sbjct: 61  QLLDSCLAIRQL 72


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical
           protein T13H2.5a protein.
          Length = 2471

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 84  CPVCYEIPSGQIFQCNEGHHVCDQC 158
           C VC E+  G I     GH  CDQC
Sbjct: 162 CDVCQELIQGSIMTKKCGHRFCDQC 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,155,079
Number of Sequences: 27780
Number of extensions: 171985
Number of successful extensions: 357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4308364692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)