Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E05_e613_09.seq
         (1626 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    93   4e-21
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       25   1.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   4.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   4.8  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   8.5  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 93.5 bits (222), Expect = 4e-21
 Identities = 56/132 (42%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
 Frame = +3

Query: 69  IRHEGKIDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTFGLCNAGQTFQRFIDEVLR 248
           IR+   IDL  +Y QIP++PE    TA       Y +  + FGL  A  +F R +D VL 
Sbjct: 388 IRYMSTIDLRSSYWQIPLSPESRQYTAFLYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLG 447

Query: 249 GQ--EFVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFT 422
            +  EFV  Y DD+L+AS T +EH  HLR VFE+L +  + IN  KS     EV+FLG  
Sbjct: 448 TEVREFVVNYIDDLLVASETLNEHLEHLRQVFEKLKQARMTINLEKSNFIQKEVKFLGHI 507

Query: 423 VTAAGIKPTTQK 458
           +T  GIK   +K
Sbjct: 508 LTINGIKADPEK 519


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 550 LNHPGAKTTIKLITARXVWPNIRKDCRLWTRTCVDC*RSKVT-PPHE 687
           L H GA      +     WPN+ +  +   R+C  C ++K +  PH+
Sbjct: 140 LGHFGATKVYNSMKREYYWPNMYRTIKKRLRSCDLCQKTKSSNRPHQ 186


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 484 GTSPRLYLPSEXRRQAFDTIHGLNHPGAKTTI 579
           GT   L + +      FD  HG+  PGAK  +
Sbjct: 3   GTQRYLLIATAALFLFFDLCHGVRAPGAKKKV 34


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 484 GTSPRLYLPSEXRRQAFDTIHGLNHPGAKTTI 579
           GT   L + +      FD  HG+  PGAK  +
Sbjct: 3   GTQRYLLIATAALFLFFDLCHGVRAPGAKKKV 34


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 316 SCSSFVLEAIKMSSL*GK 263
           +C+SFV+E  K+S L G+
Sbjct: 210 NCASFVIEVRKLSRLLGE 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,542
Number of Sequences: 336
Number of extensions: 4311
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 49266425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)