Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_E05_e613_09.seq
(1626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 86 2e-17
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 86 2e-17
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 86 2e-17
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 86 2e-17
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 86 2e-17
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 86 2e-17
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 86 2e-17
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 86 2e-17
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 82 2e-16
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 82 2e-16
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 82 2e-16
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 27 5.6
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 27 9.7
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 85.8 bits (203), Expect = 2e-17
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Frame = +3
Query: 84 KIDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTFGLCNAGQTFQRFIDEVL--RGQE 257
K+DL AY+ I V D HK A P G++E+ M +G+ A FQ FI+ +L +
Sbjct: 500 KLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKES 559
Query: 258 FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAG 437
V Y DDILI S+++ EH H++ V ++L ++IN AK + +V+F+G+ ++ G
Sbjct: 560 HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
Query: 438 IKPTTQKEEIIL 473
P + + +L
Sbjct: 620 FTPCQENIDKVL 631
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 550 LNHPGAKTTIKLITARXVWPNIRKDCRLWTRTCVDC 657
L HPG + +I R W IRK + + + C C
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTC 960
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 85.8 bits (203), Expect = 2e-17
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Frame = +3
Query: 84 KIDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTFGLCNAGQTFQRFIDEVL--RGQE 257
K+DL AY+ I V D HK A P G++E+ M +G+ A FQ FI+ +L +
Sbjct: 500 KLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKES 559
Query: 258 FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAG 437
V Y DDILI S+++ EH H++ V ++L ++IN AK + +V+F+G+ ++ G
Sbjct: 560 HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
Query: 438 IKPTTQKEEIIL 473
P + + +L
Sbjct: 620 FTPCQENIDKVL 631
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 550 LNHPGAKTTIKLITARXVWPNIRKDCRLWTRTCVDC 657
L HPG + +I R W IRK + + + C C
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTC 960
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 85.8 bits (203), Expect = 2e-17
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Frame = +3
Query: 84 KIDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTFGLCNAGQTFQRFIDEVL--RGQE 257
K+DL AY+ I V D HK A P G++E+ M +G+ A FQ FI+ +L +
Sbjct: 500 KLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKES 559
Query: 258 FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAG 437
V Y DDILI S+++ EH H++ V ++L ++IN AK + +V+F+G+ ++ G
Sbjct: 560 HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
Query: 438 IKPTTQKEEIIL 473
P + + +L
Sbjct: 620 FTPCQENIDKVL 631
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 550 LNHPGAKTTIKLITARXVWPNIRKDCRLWTRTCVDC 657
L HPG + +I R W IRK + + + C C
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTC 960
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 85.8 bits (203), Expect = 2e-17
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Frame = +3
Query: 84 KIDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTFGLCNAGQTFQRFIDEVL--RGQE 257
K+DL AY+ I V D HK A P G++E+ M +G+ A FQ FI+ +L +
Sbjct: 500 KLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKES 559
Query: 258 FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAG 437
V Y DDILI S+++ EH H++ V ++L ++IN AK + +V+F+G+ ++ G
Sbjct: 560 HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
Query: 438 IKPTTQKEEIIL 473
P + + +L
Sbjct: 620 FTPCQENIDKVL 631
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 550 LNHPGAKTTIKLITARXVWPNIRKDCRLWTRTCVDC 657
L HPG + +I R W IRK + + + C C
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTC 960
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 85.8 bits (203), Expect = 2e-17
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Frame = +3
Query: 84 KIDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTFGLCNAGQTFQRFIDEVL--RGQE 257
K+DL AY+ I V D HK A P G++E+ M +G+ A FQ FI+ +L +
Sbjct: 500 KLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKES 559
Query: 258 FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAG 437
V Y DDILI S+++ EH H++ V ++L ++IN AK + +V+F+G+ ++ G
Sbjct: 560 HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
Query: 438 IKPTTQKEEIIL 473
P + + +L
Sbjct: 620 FTPCQENIDKVL 631
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 550 LNHPGAKTTIKLITARXVWPNIRKDCRLWTRTCVDC 657
L HPG + +I R W IRK + + + C C
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTC 960
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 85.8 bits (203), Expect = 2e-17
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Frame = +3
Query: 84 KIDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTFGLCNAGQTFQRFIDEVL--RGQE 257
K+DL AY+ I V D HK A P G++E+ M +G+ A FQ FI+ +L +
Sbjct: 500 KLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKES 559
Query: 258 FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAG 437
V Y DDILI S+++ EH H++ V ++L ++IN AK + +V+F+G+ ++ G
Sbjct: 560 HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
Query: 438 IKPTTQKEEIIL 473
P + + +L
Sbjct: 620 FTPCQENIDKVL 631
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 550 LNHPGAKTTIKLITARXVWPNIRKDCRLWTRTCVDC 657
L HPG + +I R W IRK + + + C C
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTC 960
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 85.8 bits (203), Expect = 2e-17
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Frame = +3
Query: 84 KIDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTFGLCNAGQTFQRFIDEVL--RGQE 257
K+DL AY+ I V D HK A P G++E+ M +G+ A FQ FI+ +L +
Sbjct: 500 KLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKES 559
Query: 258 FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAG 437
V Y DDILI S+++ EH H++ V ++L ++IN AK + +V+F+G+ ++ G
Sbjct: 560 HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
Query: 438 IKPTTQKEEIIL 473
P + + +L
Sbjct: 620 FTPCQENIDKVL 631
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 550 LNHPGAKTTIKLITARXVWPNIRKDCRLWTRTCVDC 657
L HPG + +I R W IRK + + + C C
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTC 960
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 85.8 bits (203), Expect = 2e-17
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Frame = +3
Query: 84 KIDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTFGLCNAGQTFQRFIDEVL--RGQE 257
K+DL AY+ I V D HK A P G++E+ M +G+ A FQ FI+ +L +
Sbjct: 500 KLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKES 559
Query: 258 FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAG 437
V Y DDILI S+++ EH H++ V ++L ++IN AK + +V+F+G+ ++ G
Sbjct: 560 HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
Query: 438 IKPTTQKEEIIL 473
P + + +L
Sbjct: 620 FTPCQENIDKVL 631
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 550 LNHPGAKTTIKLITARXVWPNIRKDCRLWTRTCVDC 657
L HPG + +I R W IRK + + + C C
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTC 960
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 82.2 bits (194), Expect = 2e-16
Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Frame = +3
Query: 84 KIDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTFGLCNAGQTFQRFIDEVLRG--QE 257
K+DL AY+ I V D HK A P G++E+ M +G+ A FQ FI+ +L +
Sbjct: 500 KLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKES 559
Query: 258 FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAG 437
V Y D+ILI S+++ EH H++ V ++L ++IN AK + +V+F+G+ ++ G
Sbjct: 560 HVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
Query: 438 IKPTTQKEEIIL 473
P + + +L
Sbjct: 620 FTPCQENIDKVL 631
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 550 LNHPGAKTTIKLITARXVWPNIRKDCRLWTRTCVDC 657
L HPG + +I R W IRK + + + C C
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTC 960
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 82.2 bits (194), Expect = 2e-16
Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Frame = +3
Query: 84 KIDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTFGLCNAGQTFQRFIDEVLRG--QE 257
K+DL AY+ I V D HK A P G++E+ M +G+ A FQ FI+ +L +
Sbjct: 500 KLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKES 559
Query: 258 FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAG 437
V Y D+ILI S+++ EH H++ V ++L ++IN AK + +V+F+G+ ++ G
Sbjct: 560 HVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
Query: 438 IKPTTQKEEIIL 473
P + + +L
Sbjct: 620 FTPCQENIDKVL 631
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 550 LNHPGAKTTIKLITARXVWPNIRKDCRLWTRTCVDC 657
L HPG + +I R W IRK + + + C C
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTC 960
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 82.2 bits (194), Expect = 2e-16
Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Frame = +3
Query: 84 KIDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTFGLCNAGQTFQRFIDEVLRG--QE 257
K+DL AY+ I V D HK A P G++E+ M +G+ A FQ FI+ +L +
Sbjct: 500 KLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKES 559
Query: 258 FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAG 437
V Y D+ILI S+++ EH H++ V ++L ++IN AK + +V+F+G+ ++ G
Sbjct: 560 HVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
Query: 438 IKPTTQKEEIIL 473
P + + +L
Sbjct: 620 FTPCQENIDKVL 631
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 550 LNHPGAKTTIKLITARXVWPNIRKDCRLWTRTCVDC 657
L HPG + +I R W IRK + + + C C
Sbjct: 925 LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTC 960
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +3
Query: 75 HEGKIDLVRAYNQIPVAPEDIHKTAIATP---FGLYEFPFMTFGLCNAGQTFQRFIDEVL 245
++GK L N+ P ++ +KT ATP +FP T + T++ +++V
Sbjct: 9 YDGKAVLAYWLNRSPSISKEEYKTVSATPAVQLAQIQFPLPTLVIPAESTTYREVVEDVF 68
Query: 246 RGQEFVFPYSDDILIASR 299
E P+ + + ++
Sbjct: 69 AKVEQEHPWVKETKLVAK 86
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 312 HEHHLRAVFERLHEHGVLINCAKSQLGVPEVEF 410
H+ + AV HE+G L+ CA S V +EF
Sbjct: 98 HQASVNAVSWAPHEYGALLACASSDGKVSVLEF 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,019,781
Number of Sequences: 5004
Number of extensions: 68077
Number of successful extensions: 178
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 921710910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -