Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_E05_e613_09.seq
(1626 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U87595-1|AAB63117.1| 197|Homo sapiens polymerase protein. 41 0.011
AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein. 41 0.015
U87589-1|AAB63112.1| 197|Homo sapiens polymerase protein. 40 0.026
U87590-1|AAB63113.1| 198|Homo sapiens polymerase protein. 37 0.18
M14123-4|AAA88033.1| 1361|Homo sapiens protein ( Human endogenou... 37 0.18
DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase p... 37 0.18
AF333072-2|AAL60056.1| 702|Homo sapiens pol protein protein. 37 0.18
AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein. 37 0.18
AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein. 37 0.18
AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein pro... 37 0.18
AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein... 37 0.18
AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein. 37 0.18
AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein. 37 0.18
U87593-1|AAB63116.1| 201|Homo sapiens polymerase protein. 36 0.42
AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein pro... 36 0.42
U87591-1|AAB63114.1| 198|Homo sapiens polymerase protein. 36 0.56
AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein. 36 0.56
AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein pro... 33 2.2
AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein. 33 2.2
AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein. 33 2.2
AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein. 33 3.0
AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein. 32 5.2
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 32 6.9
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 32 6.9
AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein. 31 9.1
>U87595-1|AAB63117.1| 197|Homo sapiens polymerase protein.
Length = 197
Score = 41.1 bits (92), Expect = 0.011
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P + P F G+ N+ Q F+ +VL
Sbjct: 47 IDLKYCFFTIPLAKQDFEKLAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVAQVL 106
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ T+D+ + + G+ I K Q+ P
Sbjct: 107 QPVRDKFSDCYIIHYVDDILCAAETRDKLIDCYTFLQTEVANAGLTIASDKIQISTP-FH 165
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG V IKP QK EI
Sbjct: 166 YLGMQVEERKIKP--QKVEI 183
>AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 40.7 bits (91), Expect = 0.015
Identities = 41/140 (29%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P Y+ P F G+ N+ Q F+ L
Sbjct: 104 IDLKDCFFTIPLAEQDCEKFAFTIPAINYKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 163
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 164 QPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 222
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 223 YLGMQIENRKIKP--QKIEI 240
>U87589-1|AAB63112.1| 197|Homo sapiens polymerase protein.
Length = 197
Score = 39.9 bits (89), Expect = 0.026
Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P + P F G+ N+ Q F+ +VL
Sbjct: 47 IDLKYCFFTIPLAKQDFEKLAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVAQVL 106
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ T+D+ + + G+ I K Q P
Sbjct: 107 QPVRDKFSDCYIIHYVDDILCAAETRDKLIDCYTFLQTEVANAGLTIASDKIQTSTP-FH 165
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG V IKP QK EI
Sbjct: 166 YLGMQVEERKIKP--QKVEI 183
>U87590-1|AAB63113.1| 198|Homo sapiens polymerase protein.
Length = 198
Score = 37.1 bits (82), Expect = 0.18
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P + P F G+ N+ Q F+ L
Sbjct: 47 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 106
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 107 QPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 165
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 166 YLGMQIENRKIKP--QKIEI 183
>M14123-4|AAA88033.1| 1361|Homo sapiens protein ( Human endogenous
retrovirus HERV-K10. ).
Length = 1361
Score = 37.1 bits (82), Expect = 0.18
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P + P F G+ N+ Q F+ L
Sbjct: 23 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 82
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 83 QPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 141
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 142 YLGMQIENRKIKP--QKIEI 159
>DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase
protein.
Length = 573
Score = 37.1 bits (82), Expect = 0.18
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P + P F G+ N+ Q F+ L
Sbjct: 121 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 180
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 181 QPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 239
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 240 YLGMQIENRKIKP--QKIEI 257
>AF333072-2|AAL60056.1| 702|Homo sapiens pol protein protein.
Length = 702
Score = 37.1 bits (82), Expect = 0.18
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P + P F G+ N+ Q F+ L
Sbjct: 11 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 70
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 71 QPVRDKFSDCYIIHYFDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 129
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 130 YLGMQIENRKIKP--QKIEI 147
>AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 37.1 bits (82), Expect = 0.18
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P + P F G+ N+ Q F+ L
Sbjct: 121 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 180
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 181 QPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 239
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 240 YLGMQIENRKIKP--QKIEI 257
>AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 37.1 bits (82), Expect = 0.18
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P + P F G+ N+ Q F+ L
Sbjct: 121 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 180
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 181 QPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 239
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 240 YLGMQIENRKIKP--QKIEI 257
>AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1755
Score = 37.1 bits (82), Expect = 0.18
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P + P F G+ N+ Q F+ L
Sbjct: 1044 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 1103
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 1104 QPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 1162
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 1163 YLGMQIENRKIKP--QKIEI 1180
>AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein
protein.
Length = 2294
Score = 37.1 bits (82), Expect = 0.18
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P + P F G+ N+ Q F+ L
Sbjct: 1044 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 1103
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 1104 QPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 1162
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 1163 YLGMQIENRKIKP--QKIEI 1180
>AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 37.1 bits (82), Expect = 0.18
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIAT-------PFGLYEFPFMTFGLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P +++ + G+ N+ Q F+ L
Sbjct: 104 IDLKDCFFTIPLAEQDCEKFAFTISAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 163
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 164 QPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 222
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 223 YLGMQIENRKIKP--QKIEI 240
>AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein.
Length = 596
Score = 37.1 bits (82), Expect = 0.18
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P + P F G+ N+ Q F+ L
Sbjct: 120 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 179
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 180 QPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 238
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 239 YLGMQIENRKIKP--QKIEI 256
>U87593-1|AAB63116.1| 201|Homo sapiens polymerase protein.
Length = 201
Score = 35.9 bits (79), Expect = 0.42
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 13/133 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P + P F G+ N+ Q F+ L
Sbjct: 50 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 109
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 110 QPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 168
Query: 408 FLGFTVTAAGIKP 446
+LG + IKP
Sbjct: 169 YLGMQIENRKIKP 181
>AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1177
Score = 35.9 bits (79), Expect = 0.42
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 13/133 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P + P F G+ N+ Q F+ L
Sbjct: 1044 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 1103
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 1104 QPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVASAGLAIASDKIQTSTP-FH 1162
Query: 408 FLGFTVTAAGIKP 446
+LG + IKP
Sbjct: 1163 YLGMQIENRKIKP 1175
>U87591-1|AAB63114.1| 198|Homo sapiens polymerase protein.
Length = 198
Score = 35.5 bits (78), Expect = 0.56
Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P + P F G+ N+ Q F+ L
Sbjct: 47 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 106
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ TKD+ + + G+ I K + P
Sbjct: 107 QPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIRTSTP-FH 165
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 166 YLGMQIENRKIKP--QKIEI 183
>AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein.
Length = 597
Score = 35.5 bits (78), Expect = 0.56
Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTF-------GLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P + P F G+ N Q F+ L
Sbjct: 120 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNNPTICQTFVGRAL 179
Query: 246 RGQE------FVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ Y DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 180 QPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 238
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK E+
Sbjct: 239 YLGMQIENRKIKP--QKIEV 256
>AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1879
Score = 33.5 bits (73), Expect = 2.2
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIA-------TPFGLYEFPFMTFGLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P +++ + G+ N+ Q F+ L
Sbjct: 1044 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 1103
Query: 246 R------GQEFVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 1104 QPVREKFSDCYIIHCIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 1162
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 1163 YLGMQIENRKIKP--QKIEI 1180
>AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 33.5 bits (73), Expect = 2.2
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIA-------TPFGLYEFPFMTFGLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P +++ + G+ N+ Q F+ L
Sbjct: 121 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 180
Query: 246 R------GQEFVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 181 QPVREKFSDCYIIHCIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 239
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 240 YLGMQIENRKIKP--QKIEI 257
>AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 33.5 bits (73), Expect = 2.2
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIA-------TPFGLYEFPFMTFGLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P +++ + G+ N+ Q F+ L
Sbjct: 121 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRAL 180
Query: 246 R------GQEFVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 181 QPVREKFSDCYIIHCIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 239
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 240 YLGMQIENRKIKP--QKIEI 257
>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
Length = 1183
Score = 33.1 bits (72), Expect = 3.0
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +3
Query: 270 YSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAGIKPT 449
Y DD+L+ T A+ L + G ++ K+Q+ P+V +LGFT+
Sbjct: 331 YVDDLLLGHPTAVGCAKGTDALLRHLEDCGYKVSKKKAQICRPQVRYLGFTIRQGERSLG 390
Query: 450 TQKEEII 470
++++++I
Sbjct: 391 SERKQVI 397
>AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 32.3 bits (70), Expect = 5.2
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 13/140 (9%)
Frame = +3
Query: 87 IDLVRAYNQIPVAPEDIHKTAIATPF-------GLYEFPFMTFGLCNAGQTFQRFIDEVL 245
IDL + IP+A +D K A P +++ + G+ N Q F+ L
Sbjct: 104 IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPPTRFQWKVLPQGMLNNPTICQTFVGRAL 163
Query: 246 R------GQEFVFPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVE 407
+ ++ DDIL A+ TKD+ + + G+ I K Q P
Sbjct: 164 QPVREKFSDCYIIHCIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTP-FH 222
Query: 408 FLGFTVTAAGIKPTTQKEEI 467
+LG + IKP QK EI
Sbjct: 223 YLGMQIENRKIKP--QKIEI 240
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 31.9 bits (69), Expect = 6.9
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 364 STPCSCRRSNTARR*CSCSS 305
STPCSCR S T+ CSC S
Sbjct: 85 STPCSCRSSGTSSTSCSCWS 104
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 31.9 bits (69), Expect = 6.9
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 364 STPCSCRRSNTARR*CSCSS 305
STPCSCR S T+ CSC S
Sbjct: 85 STPCSCRSSGTSSTSCSCWS 104
>AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein.
Length = 727
Score = 31.5 bits (68), Expect = 9.1
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Frame = +3
Query: 159 PFGLYEFPFMTFGLCNAGQTFQRFIDEVLRGQE------FVFPYSDDILIASRTKDEHEH 320
P +++ + G+ N+ Q F+ L+ ++ Y DDIL A+ TKD+
Sbjct: 15 PATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLID 74
Query: 321 HLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAGIKPTTQKEEI 467
+ + G+ I K Q P +LG + IKP QK EI
Sbjct: 75 CYTFLQAEVANAGLAIASDKIQTSTP-FHYLGMQIENRKIKP--QKIEI 120
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,608,815
Number of Sequences: 237096
Number of extensions: 2507404
Number of successful extensions: 4187
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4166
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 24393700986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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