Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E05_e613_09.seq
         (1626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    65   1e-10
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    65   1e-10
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    65   1e-10
U41011-7|AAA82290.1|  271|Caenorhabditis elegans Hypothetical pr...    29   7.1  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
 Frame = +3

Query: 90   DLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTFGLCNAGQTFQRFIDEVLRGQEFV-- 263
            D++  + QIP+  +    TA A    L+E+  + FGL  +   FQ  ++E++     V  
Sbjct: 1118 DMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCA 1177

Query: 264  FPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAGIK 443
            F Y DD+LIAS+  ++H   ++    R+ + G+ +  +K  +   EVE+LG  VT  G++
Sbjct: 1178 FVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVE 1237

Query: 444  PTTQKEE 464
                K +
Sbjct: 1238 TQEVKTD 1244


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
 Frame = +3

Query: 90   DLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTFGLCNAGQTFQRFIDEVLRGQEFV-- 263
            D++  + QIP+  +    TA A    L+E+  + FGL  +   FQ  ++E++     V  
Sbjct: 1021 DMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCA 1080

Query: 264  FPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAGIK 443
            F Y DD+LIAS+  ++H   ++    R+ + G+ +  +K  +   EVE+LG  VT  G++
Sbjct: 1081 FVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVE 1140

Query: 444  PTTQKEE 464
                K +
Sbjct: 1141 TQEVKTD 1147


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
 Frame = +3

Query: 90   DLVRAYNQIPVAPEDIHKTAIATPFGLYEFPFMTFGLCNAGQTFQRFIDEVLRGQEFV-- 263
            D++  + QIP+  +    TA A    L+E+  + FGL  +   FQ  ++E++     V  
Sbjct: 1032 DMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCA 1091

Query: 264  FPYSDDILIASRTKDEHEHHLRAVFERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAGIK 443
            F Y DD+LIAS+  ++H   ++    R+ + G+ +  +K  +   EVE+LG  VT  G++
Sbjct: 1092 FVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVE 1151

Query: 444  PTTQKEE 464
                K +
Sbjct: 1152 TQEVKTD 1158


>U41011-7|AAA82290.1|  271|Caenorhabditis elegans Hypothetical
           protein D2024.2 protein.
          Length = 271

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 171 YEFPFMTFGLCNAGQTFQRFIDEVLRGQEFV---FPYSDDILIASRTKDEH 314
           Y F  + +GL   G+T    +++V+ G +F+   +P   ++L+   +   H
Sbjct: 98  YAFASVGYGLSTEGRTLTETVEDVVNGVDFILKLYPNVSNVLVGGHSAGAH 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,947,991
Number of Sequences: 27780
Number of extensions: 403269
Number of successful extensions: 897
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4732777488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)