Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E04_e605_10.seq
         (1528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.07 |||substrate-specific nuclear cofactor for exosome a...    41   4e-04
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    32   0.24 
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    28   3.0  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    28   3.9  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    27   9.0  
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    27   9.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   9.0  

>SPCC1739.07 |||substrate-specific nuclear cofactor for exosome
           activity |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 133

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
 Frame = +3

Query: 225 YDSLIQNL-KELQEVLDQVLPLKQHYDKLSIPD------QIELDLFLAFTLNSLYWVNLR 383
           Y  L + L K+L  V D + PLK       + +      Q +L + +++ +NS  +   +
Sbjct: 5   YSELFERLNKQLDNVEDVLKPLKDAESIFELAEGKSELEQAKLYITMSYAINSTLYSFYK 64

Query: 384 IQGIDPMTHPIKNELQRIKATMMKWQQVK 470
           + GID    P+  ELQR+K  + K QQ +
Sbjct: 65  LNGIDASERPVMQELQRVKNYISKIQQAE 93


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 22/80 (27%), Positives = 41/80 (51%)
 Frame = +3

Query: 192 ELSQDKDFVNNYDSLIQNLKELQEVLDQVLPLKQHYDKLSIPDQIELDLFLAFTLNSLYW 371
           +LSQ+++   N DS++Q L ELQ  +     L Q  +K  +    +L+ F  F  N  + 
Sbjct: 42  KLSQNEEDAKNMDSVVQKLNELQNNVVAFQKLLQ--EKTPLSSIQDLEGFREFMENLEHR 99

Query: 372 VNLRIQGIDPMTHPIKNELQ 431
             + +  +  ++H + N+LQ
Sbjct: 100 YEMTVSEVRRLSHEV-NDLQ 118


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = +2

Query: 272 SGVTS*TALRQTFNSRPDRARLISSFYIKFSLLGKLAHTGNRPNDPS-----NQKRAPEN 436
           S  T+ T      +SRP+RA  + S  +      K    G+  +DP+     + K APE+
Sbjct: 311 SAATNVTGYVSETDSRPNRANSLDSAVLLVQSSNKSNRNGHHISDPNLNSSISLKFAPED 370

Query: 437 QSHN 448
            +HN
Sbjct: 371 TAHN 374


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 225 YDSLIQNLKELQEVLDQVLPLKQHYDKLSIPD 320
           Y   ++NLK++ E+LD +  +   YD L   D
Sbjct: 415 YAQYLRNLKKVSEILDYITKIASDYDLLKRDD 446


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 917 NIMAXXIKXPNHESYXCSTDPIKPNPY 837
           N+ +  I   N++ + C T P+  NPY
Sbjct: 546 NLTSYEILLDNYKDFICMTSPVTLNPY 572


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 426 LQRIKATMMKWQQVKDHDKRPQVDREAVKRFIRSGLYDPS 545
           LQ  K+T  +W+++  H   P  + +A++      +YDP+
Sbjct: 240 LQDYKSTFPRWKRMDLHKVVPNGEEDAIELLSAMLVYDPA 279


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 22/107 (20%), Positives = 26/107 (24%), Gaps = 1/107 (0%)
 Frame = -2

Query: 1455 PPPXXGGXXAFLXSKRAGXXPXXXXPXVPXALRXPXPPPXFXGSXPGKGXQSXXKXPXLP 1276
            PPP  G   +   S      P    P +    + P PPP    S            P  P
Sbjct: 257  PPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPP 316

Query: 1275 XGXXRXXXXXXXXXXXXXQXGTPVSXPREXRPEIXP-PXRXMGXPPP 1138
                                  P   PR       P P +    PPP
Sbjct: 317  PSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,664,972
Number of Sequences: 5004
Number of extensions: 82177
Number of successful extensions: 252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 856299168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)