Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E04_e605_10.seq
         (1528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1022 + 10323158-10323393,10323486-10323531,10325887-103259...    38   0.028
05_01_0517 + 4403644-4403796,4404025-4404307,4404324-4404749,440...    30   5.6  
01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997     30   5.6  
06_03_1286 - 29000688-29001526,29001982-29002075,29002480-290025...    29   7.4  
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238...    29   7.4  
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141...    29   9.7  

>08_01_1022 +
           10323158-10323393,10323486-10323531,10325887-10325941,
           10326027-10326107,10326189-10326400
          Length = 209

 Score = 37.5 bits (83), Expect = 0.028
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +3

Query: 381 RIQGIDPMTHPIKNELQRIKATMMKWQQVKDHDKRP-----QVDREAVKRFIRSGL 533
           R  G+DP  HPIK E +R+     K  + +D DK P      V+ +A  RFI   L
Sbjct: 79  RCSGVDPDEHPIKKEFERLSLWEEKLNRFEDWDKAPLRPTTTVNTQAAARFIGHSL 134


>05_01_0517 +
           4403644-4403796,4404025-4404307,4404324-4404749,
           4404789-4405372,4417315-4417479,4417629-4417694
          Length = 558

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +3

Query: 354 LNSLYWVNLRIQGIDPMTHPIKNELQRIKATM-MKWQQVKDHDKRPQVDREAVKRFIRSG 530
           ++++ W   R+Q      H +K E + I A + +  +++ DHDKRPQ   +A+   + S 
Sbjct: 89  VSNIGWSEERLQTRQRGMHTVK-ETKMIAAKLDLLLKRLDDHDKRPQGTVKALDSHVTSR 147

Query: 531 LYDPSKPNTQQNKKIKFSENS 593
           +     P T +      + N+
Sbjct: 148 VIRNDCPETHEEAMYTGNNNN 168


>01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997
          Length = 387

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 354 LNSLYWVNLRIQGIDPMTHPIKNELQRIKATM-MKWQQVKDHDKRPQ 491
           ++++ W   R+Q      H +K E++ + A + +  +Q+ DHDKRPQ
Sbjct: 30  VSNMGWSEERLQTCQRGMHTVK-EMELLAAKLDLLMKQLDDHDKRPQ 75


>06_03_1286 -
           29000688-29001526,29001982-29002075,29002480-29002581,
           29002638-29002710,29003747-29003804,29003859-29003904,
           29003985-29004111,29004198-29004273,29004348-29004405,
           29004490-29004588,29004679-29004807,29005333-29005454,
           29005567-29005735,29005829-29005929,29006082-29006208,
           29006284-29006373,29006516-29006602,29006703-29006963,
           29007029-29007058
          Length = 895

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 135 FKMKENISKSVIKWDIDYGELSQDKDFVNNYDSLIQNLKELQEVLDQVLPLKQHY 299
           F + + I+  ++ W +D G+L  ++   N +     N KEL + L     LK H+
Sbjct: 509 FSVTKGITAGMVHWLVDKGKLKYEETVANIWPKFGTNKKELIKTLICNFLLKVHH 563


>01_01_0292 -
           2387653-2387711,2388061-2388684,2388814-2389104,
           2389338-2389390,2390496-2390968,2391090-2391432,
           2391793-2391911,2392081-2392512,2392657-2392747,
           2392833-2392942,2393681-2393875,2394581-2394622,
           2395144-2395268,2395856-2395926,2396047-2396147
          Length = 1042

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
 Frame = +3

Query: 366 YWVNLRIQGIDPMTHPI-------KNELQRIKATMMKWQQVKDHDKRPQVD 497
           YW + R   + PM  P        K  L ++K+   KW  +  H K+PQ D
Sbjct: 732 YWPSPRAPPVSPMGSPRTPNGSQKKPVLGKVKSKAKKWMHLLHHKKKPQED 782


>07_03_1182 -
           24610862-24611637,24612223-24612340,24612441-24614120,
           24614253-24614320,24615370-24615550
          Length = 940

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 192 ELSQDKDFVNNYDSLIQNLKELQEVLDQVLPLKQH 296
           E+SQ K    N+++LIQ L++LQ + D+V   K H
Sbjct: 709 EVSQIKP--ENFEALIQKLEQLQSMNDEVANKKDH 741


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,623,835
Number of Sequences: 37544
Number of extensions: 543691
Number of successful extensions: 1189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4907691684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)