Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_E04_e605_10.seq
(1528 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 32 1.2
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 32 1.2
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 32 1.2
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 32 1.2
Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical pr... 30 3.8
AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical... 30 3.8
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 29 6.6
Z19157-1|CAB63418.2| 733|Caenorhabditis elegans Hypothetical pr... 29 6.6
D86922-1|BAA13180.1| 733|Caenorhabditis elegans cyclic nucleoti... 29 6.6
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 29 6.6
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 29 6.6
AF036704-4|ABA00184.1| 352|Caenorhabditis elegans Hypothetical ... 29 6.6
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 29 6.6
AF045640-2|AAM81123.1| 185|Caenorhabditis elegans Hypothetical ... 29 8.7
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 31.9 bits (69), Expect = 1.2
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 323 DRARLISSFYIKFSLLGKLAHTGNRPNDPSNQKR 424
D ++ +F++KF+L G L RP DP+N+++
Sbjct: 2590 DWSKFKHAFWLKFALWGMLRTIAKRPTDPNNKRK 2623
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 31.9 bits (69), Expect = 1.2
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 323 DRARLISSFYIKFSLLGKLAHTGNRPNDPSNQKR 424
D ++ +F++KF+L G L RP DP+N+++
Sbjct: 2601 DWSKFKHAFWLKFALWGMLRTIAKRPTDPNNKRK 2634
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 31.9 bits (69), Expect = 1.2
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 323 DRARLISSFYIKFSLLGKLAHTGNRPNDPSNQKR 424
D ++ +F++KF+L G L RP DP+N+++
Sbjct: 2601 DWSKFKHAFWLKFALWGMLRTIAKRPTDPNNKRK 2634
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 31.9 bits (69), Expect = 1.2
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 323 DRARLISSFYIKFSLLGKLAHTGNRPNDPSNQKR 424
D ++ +F++KF+L G L RP DP+N+++
Sbjct: 2601 DWSKFKHAFWLKFALWGMLRTIAKRPTDPNNKRK 2634
>Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 30.3 bits (65), Expect = 3.8
Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +3
Query: 201 QDKDFVNNYDSLIQNLKELQEVLDQVLPLKQHYDKLSIPDQIELDLFLAFTLNSLYWVNL 380
+DKD +N+Y LI+ E + +++ K H KL + + +LD ++ W+
Sbjct: 72 KDKDKLNSYRKLIEQRMEQFKDVERENKTKPH-SKLGLSAEEKLDPKEKEKAETMDWIQH 130
Query: 381 RIQGIDPMTHPIKNELQRIKAT-MMKWQQVKDHDKRPQVDRE 503
+I+ ++ + +L+ + T K ++ K D + + +RE
Sbjct: 131 QIRSLNEEVDRTEMQLESLSNTDTGKGKRGKKEDAKTKNERE 172
>AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 30.3 bits (65), Expect = 3.8
Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +3
Query: 201 QDKDFVNNYDSLIQNLKELQEVLDQVLPLKQHYDKLSIPDQIELDLFLAFTLNSLYWVNL 380
+DKD +N+Y LI+ E + +++ K H KL + + +LD ++ W+
Sbjct: 72 KDKDKLNSYRKLIEQRMEQFKDVERENKTKPH-SKLGLSAEEKLDPKEKEKAETMDWIQH 130
Query: 381 RIQGIDPMTHPIKNELQRIKAT-MMKWQQVKDHDKRPQVDRE 503
+I+ ++ + +L+ + T K ++ K D + + +RE
Sbjct: 131 QIRSLNEEVDRTEMQLESLSNTDTGKGKRGKKEDAKTKNERE 172
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 29.5 bits (63), Expect = 6.6
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 189 GELSQDKDFVNNYDSLIQNLKELQEVLDQVLPLKQHYDKLSIP 317
G+++QD NY SL++ +++++ ++ +K H DK + P
Sbjct: 113 GDVTQDSPKFKNYFSLVET---MEKIIPPIIEMKDHDDKEATP 152
>Z19157-1|CAB63418.2| 733|Caenorhabditis elegans Hypothetical
protein ZC84.2 protein.
Length = 733
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 294 HYDKLSIPDQIELDLFLAFTLNSLYWVNLRIQGIDPMTHPIKN 422
H +K S+PD I D L + S YW L + I + P++N
Sbjct: 345 HLNKQSLPDDIT-DTLLRRYVYSFYWSTLILTTIGEVPSPVRN 386
>D86922-1|BAA13180.1| 733|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 733
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 294 HYDKLSIPDQIELDLFLAFTLNSLYWVNLRIQGIDPMTHPIKN 422
H +K S+PD I D L + S YW L + I + P++N
Sbjct: 345 HLNKQSLPDDIT-DTLLRRYVYSFYWSTLILTTIGEVPSPVRN 386
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 29.5 bits (63), Expect = 6.6
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 189 GELSQDKDFVNNYDSLIQNLKELQEVLDQVLPLKQHYDKLSIP 317
G+++QD NY SL++ +++++ ++ +K H DK + P
Sbjct: 113 GDVTQDSPKFKNYFSLVET---MEKIIPPIIEMKDHDDKEATP 152
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 29.5 bits (63), Expect = 6.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 195 LSQDKDFVNNYDSLIQNLKELQE 263
+ D D +YD+LIQ+LKELQ+
Sbjct: 392 VQSDPDLDTDYDNLIQSLKELQD 414
>AF036704-4|ABA00184.1| 352|Caenorhabditis elegans Hypothetical
protein ZK185.5 protein.
Length = 352
Score = 29.5 bits (63), Expect = 6.6
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +3
Query: 147 ENISKSVIKWDIDYGELSQDKDFVNNYDSLIQNLKELQEVLDQVLPLKQHYD 302
E +S+ ++K I++ E + D V Y + ++ L E+ V+D+ LPLK +D
Sbjct: 272 EKLSR-ILKIVIEHDERIKYVDHVMVYHTTLEALAEVHIVMDENLPLKVTHD 322
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 29.5 bits (63), Expect = 6.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 195 LSQDKDFVNNYDSLIQNLKELQE 263
+ D D +YD+LIQ+LKELQ+
Sbjct: 131 VQSDPDLDTDYDNLIQSLKELQD 153
>AF045640-2|AAM81123.1| 185|Caenorhabditis elegans Hypothetical
protein C11D2.7 protein.
Length = 185
Score = 29.1 bits (62), Expect = 8.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 234 LIQNLKELQEVLDQVLPLKQHYDKLSIPDQIEL 332
LI+N L+ L+++LP K+++ + D IEL
Sbjct: 29 LIENFPYLEPHLEEILPKKENFKVIKCKDHIEL 61
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,391,585
Number of Sequences: 27780
Number of extensions: 485508
Number of successful extensions: 1108
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4390273854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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