Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E04_e605_10.seq
         (1528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25080.1 68418.m02972 expressed protein                             52   8e-07
At5g16600.1 68418.m01943 myb family transcription factor (MYB43)...    29   6.1  
At5g35604.1 68418.m04242 hypothetical protein                          29   8.1  

>At5g25080.1 68418.m02972 expressed protein
          Length = 217

 Score = 52.4 bits (120), Expect = 8e-07
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
 Frame = +3

Query: 246 LKELQEVLDQVLPLKQHYDKLSI-PDQIELDL-FLAFTLNSLYWVNLRIQGIDPMTHPIK 419
           LKEL+  L+Q+L L +     ++ P Q    +  LA    +LY + LR  G+DP  H +K
Sbjct: 31  LKELKPQLEQMLTLAEPEVLAAMQPLQRAKTMHLLAEATTTLYELRLRCTGVDPDDHRVK 90

Query: 420 NELQRIKATMMKWQQVKDHDKRP-----QVDREAVKRFIRSGLYDPSKPNTQQNKKIKFS 584
           +E++RI     K+Q+  D  K P      ++R+A  RFI   L D +    Q  + +   
Sbjct: 91  SEIERINVYREKFQKCVDQSKGPLRPTTVLNRQAATRFIEHSLPDLTSTQKQSIRDLSKG 150

Query: 585 ENS 593
           E S
Sbjct: 151 EKS 153


>At5g16600.1 68418.m01943 myb family transcription factor (MYB43)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 327

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 378 LRIQGIDPMTH-PIKNELQRIKATMMKWQQVKDHDKRPQVDRE 503
           LR  GIDP+TH P+  +    +A   K   V   DK P+ D++
Sbjct: 116 LRKMGIDPLTHKPLSEQEASQQAQGRKKSLVPHDDKNPKQDQQ 158


>At5g35604.1 68418.m04242 hypothetical protein
          Length = 298

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 1182 PEIXPPXRXMGXPPPV 1135
            P + PP R MG PPPV
Sbjct: 94   PRLSPPSRTMGPPPPV 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,825,279
Number of Sequences: 28952
Number of extensions: 440790
Number of successful extensions: 1040
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4086763008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)