Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E03_e597_09.seq
         (1535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)     115   7e-26
At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA...   115   7e-26
At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near...    30   4.7  

>At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)
          Length = 105

 Score =  115 bits (277), Expect = 7e-26
 Identities = 55/101 (54%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
 Frame = +3

Query: 93  MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 266
           MVN+PK + TY              +QYKK K+  AAQG+RRYDRKQ GYGGQ+KP+F  
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 267 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 389
                  IVLRL+C  CK  SQ  +KRCKHFE+GGDKK KG
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKG 101


>At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA)
           similar to ribosomal protein L41 GB:AAA34366 from
           [Candida maltosa]
          Length = 105

 Score =  115 bits (277), Expect = 7e-26
 Identities = 55/101 (54%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
 Frame = +3

Query: 93  MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 266
           MVN+PK + TY              +QYKK K+  AAQG+RRYDRKQ GYGGQ+KP+F  
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 267 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 389
                  IVLRL+C  CK  SQ  +KRCKHFE+GGDKK KG
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKG 101


>At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly
           identical to RelA/SpoT homolog RSH2 [Arabidopsis
           thaliana] GI:7141306; contains Pfam profiles PF01966: HD
           domain, PF04607: Region found in RelA / SpoT proteins
          Length = 709

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 382 LFLSPPSSKCLQRFRATCDLTLQSAHSRRST 290
           L+ SPPSS C    + +CDL L S  S  S+
Sbjct: 9   LYASPPSSVCSTPHQISCDLDLTSRSSSTSS 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,678,713
Number of Sequences: 28952
Number of extensions: 402860
Number of successful extensions: 769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4115678784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)