Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_E02_e589_10.seq
         (1606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          215   1e-55
11_01_0155 - 1287003-1287452                                          215   1e-55
03_06_0097 - 31632238-31632525,31633386-31633769                       43   8e-04
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539...    38   0.029
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962...    30   5.9  
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303     29   7.8  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  215 bits (524), Expect = 1e-55
 Identities = 96/148 (64%), Positives = 120/148 (81%)
 Frame = +1

Query: 91  AGRQXREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLL 270
           A    R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL 
Sbjct: 2   AAALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLA 61

Query: 271 GKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRS 450
           G+ +F  +D+R+ V+GGG  +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+
Sbjct: 62  GRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRT 121

Query: 451 LLVADPRRCEPKKFGGPGARARYQKSYR 534
           LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 122 LLVADPRRCEPKKFGGRGARARFQKSYR 149


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  215 bits (524), Expect = 1e-55
 Identities = 96/148 (64%), Positives = 120/148 (81%)
 Frame = +1

Query: 91  AGRQXREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLL 270
           A    R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL 
Sbjct: 2   AAALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLA 61

Query: 271 GKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRS 450
           G+ +F  +D+R+ V+GGG  +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+
Sbjct: 62  GRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRT 121

Query: 451 LLVADPRRCEPKKFGGPGARARYQKSYR 534
           LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 122 LLVADPRRCEPKKFGGRGARARFQKSYR 149


>03_06_0097 - 31632238-31632525,31633386-31633769
          Length = 223

 Score = 42.7 bits (96), Expect = 8e-04
 Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
 Frame = +1

Query: 118 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 288
           Q +   GR+KTA A    + G G + +N R         P  ++Y  + P++ LG E  +
Sbjct: 96  QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152

Query: 289 GVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADP 468
             D+ V V GGG   Q  AI   +++AL+      +  A+K  ++         LL  D 
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVARALVK-----ISTANKVTLR------GEGLLTRDT 201

Query: 469 RRCEPKKFGGPGARARYQKSYR 534
           R  E KK G   AR R Q S R
Sbjct: 202 RIVERKKAGLKKARKRPQFSKR 223


>07_03_1553 -
           27653473-27653490,27653634-27653673,27653852-27653939,
           27654150-27654230,27654644-27655084,27655692-27656325
          Length = 433

 Score = 37.5 bits (83), Expect = 0.029
 Identities = 26/79 (32%), Positives = 38/79 (48%)
 Frame = +1

Query: 136 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 315
           G++K + A  + + G G   VN +  D   P +L ++          +     D+  TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353

Query: 316 GGGHVAQVYAIRQAISKAL 372
           GGG   QV AIR  IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372


>04_03_0024 -
           9623178-9624001,9624502-9624678,9625144-9625305,
           9625520-9626032,9626801-9629153
          Length = 1342

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 330 CTGLCNQTSHL*SPYRFLPEICRRSI*EGDQRHSSSIRQKFAGR*PSSLRAQEIRWSRRP 509
           CTG+  Q S   S Y F  +I +  +  G+ +  S    K   R  +++R ++  + RRP
Sbjct: 725 CTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNIRTKKRYFLRRP 784

Query: 510 CQIP 521
            ++P
Sbjct: 785 VRLP 788


>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
          Length = 462

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 153 NCGSILQTRTWSVACKWTPPRPGRTQTSS 239
           +C S +Q R+ SV   W PP  G+T+T S
Sbjct: 275 DCVSAMQQRSSSVRLIWGPPGTGKTKTIS 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,906,658
Number of Sequences: 37544
Number of extensions: 641050
Number of successful extensions: 1370
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5209346492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)