Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D11_e660_07.seq
         (1557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    29   1.3  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    28   4.0  

>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 290 NFKLVKSVFVNGSFRHFDPQAILWHYFR 207
           + K+V + F+N  F  FDPQ I +H F+
Sbjct: 60  SLKVVDTDFINVDFEFFDPQPIDFHAFK 87


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 21/80 (26%), Positives = 38/80 (47%)
 Frame = +3

Query: 192 WDNCYTEIVPKDRLRVKVTKTPIDKNTFHKFEIAVPDDLKDYAKVENAHKEFQKVIGAAL 371
           W N Y ++ P    +VKV+   I K+T  +  +  PD L++  K++    +++K  G + 
Sbjct: 430 WSNTYKDL-PNKLAKVKVSDRTIYKSTDAERRLVSPDGLQE--KIDALVAKYEK--GRSF 484

Query: 372 VWYVPERAVLAVISRCDTSQ 431
           V       V+ V +   T Q
Sbjct: 485 VRASGTEDVVRVYAEASTKQ 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,066,571
Number of Sequences: 5004
Number of extensions: 67987
Number of successful extensions: 153
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 876120908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)