Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D11_e660_07.seq
         (1557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0313 + 33073542-33074464,33074901-33075069                       29   9.9  
02_01_0413 - 3028946-3031111                                           29   9.9  

>03_06_0313 + 33073542-33074464,33074901-33075069
          Length = 363

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 496 KSIIRVSLVDARCTRQVRLARFCEVSQREMTASTARSGTYQTSAAPITFWNSLCA 332
           K +I  S  ++ CT     + F  +S + ++ S A + +   +AAP T   S CA
Sbjct: 202 KEVISFSFDNSVCTSSAATSFFTSISSQLISMSDAATNSAAAAAAPTTKKPSSCA 256


>02_01_0413 - 3028946-3031111
          Length = 721

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +3

Query: 177 IEYLEWDNCYTEIVPKDRLRVKVTKTPIDKNTFHKFEIAVPDDLKDYAKVENAHKEFQKV 356
           +EYL + N + + +  D L +K++         ++F   +PD +    ++E  H E   +
Sbjct: 255 LEYLSFPNNHLQGIIDDALMIKLSNLGFLDLGGNRFSGKIPDSIGQLKRLEELHMEENNI 314

Query: 357 IG 362
            G
Sbjct: 315 SG 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,145,355
Number of Sequences: 37544
Number of extensions: 542896
Number of successful extensions: 1246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5023712764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)