Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D11_e660_07.seq
         (1557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2460| Best HMM Match : No HMM Matches (HMM E-Value=.)               87   5e-17
SB_28961| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.47 
SB_21711| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.3  
SB_4378| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   3.3  
SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   3.3  
SB_37030| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.4  
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   4.4  
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)                  30   5.8  
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.6  

>SB_2460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 86.6 bits (205), Expect = 5e-17
 Identities = 45/110 (40%), Positives = 64/110 (58%)
 Frame = +3

Query: 165 EFLVIEYLEWDNCYTEIVPKDRLRVKVTKTPIDKNTFHKFEIAVPDDLKDYAKVENAHKE 344
           +F VI+Y  WD  + EIVP++R+R   T   I +  ++K  I VP DLK+  K EN H+E
Sbjct: 17  KFFVIQYSGWDATFNEIVPRERIRPPNTNGSISRQMYYKVMIDVPPDLKNICKDENTHRE 76

Query: 345 FQKVIGAALVWYVPERAVLAVISRCDTSQKRARRTCRVHRASTRLTRIML 494
           F+K + AA V Y     VL V+SR +   KRA     +H  S R T+++L
Sbjct: 77  FKKQVNAACVGYNENLNVLVVLSRSELPVKRAAMLSEIHFRSLR-TKMLL 125


>SB_28961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 33.5 bits (73), Expect = 0.47
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = -1

Query: 60 PAARGIH*XLERPPPR 13
          PAARGIH  LERPPPR
Sbjct: 14 PAARGIHYVLERPPPR 29


>SB_21711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -3

Query: 175 TRNSPLIILILAVHHPH----ASFSLDLAYTSTYLVFPSCRIXCSPGDPLV 35
           T + PL +    +H P     A + LD  Y    LV       CSPGDPLV
Sbjct: 6   TESRPLCVGTHPLHPPEYGPVALYGLDRTYLFVLLVANKPSNSCSPGDPLV 56


>SB_4378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 112 LDLAYTSTYLVFPSCRIXCSPGDPLV 35
           +   +T++YL   S    CSPGDPLV
Sbjct: 19  ITFVHTTSYLTIHSASNSCSPGDPLV 44


>SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +3

Query: 192 WDNCYTEIVPKDRLRVK--VTKTPIDKNTFHKF 284
           W NC++ I+  D+++V   V+ + +DK + HKF
Sbjct: 363 WQNCHSCILENDKVKVAQGVSGSVVDKGSIHKF 395


>SB_37030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 112 LDLAYTSTYLVFPSCRIXCSPGDPLV 35
           LDL +T   ++  S    CSPGDPLV
Sbjct: 21  LDLTFTLGSVIIASLSNSCSPGDPLV 46


>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 19/59 (32%), Positives = 21/59 (35%)
 Frame = -2

Query: 1010 GKXXXGGLFXXXPXXEGGFSPXGXKLETPXXFXIXXVXXRRPXXXDXPTXXXANWGXGA 834
            G+    GLF   P  E G      KL     F    V  RRP   +  T   ANW   A
Sbjct: 14   GRAIGAGLFAITPAGERGMCCKAIKLGNASVFPSHDVVKRRPVNCNT-THYRANWSSTA 71


>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
          Length = 117

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 19/59 (32%), Positives = 21/59 (35%)
 Frame = -2

Query: 1010 GKXXXGGLFXXXPXXEGGFSPXGXKLETPXXFXIXXVXXRRPXXXDXPTXXXANWGXGA 834
            G+    GLF   P  E G      KL     F    V  RRP   +  T   ANW   A
Sbjct: 8    GRAIGAGLFAITPAGERGMCCKSIKLAHASVFPSHDVVKRRPVNCNT-THYRANWSSTA 65


>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 20/59 (33%), Positives = 21/59 (35%)
 Frame = -2

Query: 1010 GKXXXGGLFXXXPXXEGGFSPXGXKLETPXXFXIXXVXXRRPXXXDXPTXXXANWGXGA 834
            GK    GLF   P  E G      KL     F    V  RRP   +  T   ANW   A
Sbjct: 6    GKGDRCGLFAITPAGERGMCCKAIKLGNAKGFPSHDVVKRRPVNCNT-THYRANWSSTA 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,464,617
Number of Sequences: 59808
Number of extensions: 584800
Number of successful extensions: 2131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2127
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5082457441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)