Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_D11_e660_07.seq
         (1557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003138-1|AAK21371.3|  469|Caenorhabditis elegans Hypothetical ...    30   5.1  
Z73905-3|CAA98111.3|  357|Caenorhabditis elegans Hypothetical pr...    29   8.9  

>AF003138-1|AAK21371.3|  469|Caenorhabditis elegans Hypothetical
           protein F12B6.3 protein.
          Length = 469

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 185 ILYHKEFTPYHLDISSPPP 129
           + Y K F PYH D+SSPPP
Sbjct: 342 VSYLKHFEPYH-DVSSPPP 359


>Z73905-3|CAA98111.3|  357|Caenorhabditis elegans Hypothetical
           protein C32C4.3 protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 524 SGIQITNLL*KHNTSKSSRCTMHAAGASRALLRGVAAR 411
           SG+QI +L  +   S   +C +   G ++ALLRG   R
Sbjct: 94  SGLQIESLSFEKQLSVMQKCNLKTRGINQALLRGKVIR 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,734,721
Number of Sequences: 27780
Number of extensions: 424668
Number of successful extensions: 927
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4494062834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)